feat: jsonl-session progress

rust/Cargo.lock

@@ -111,7 +111,6 @@ dependencies = [
 name = "commands"
 version = "0.1.0"
 dependencies = [
- "plugins",
  "runtime",
 ]
 
@@ -826,14 +825,6 @@ dependencies = [
  "time",
 ]
 
-[[package]]
-name = "plugins"
-version = "0.1.0"
-dependencies = [
- "serde",
- "serde_json",
-]
-
 [[package]]
 name = "potential_utf"
 version = "0.1.4"
@@ -1101,7 +1092,6 @@ name = "runtime"
 version = "0.1.0"
 dependencies = [
  "glob",
- "plugins",
  "regex",
  "serde",
  "serde_json",
@@ -1191,7 +1181,6 @@ dependencies = [
  "commands",
  "compat-harness",
  "crossterm",
- "plugins",
  "pulldown-cmark",
  "runtime",
  "rustyline",
@@ -1557,7 +1546,6 @@ name = "tools"
 version = "0.1.0"
 dependencies = [
  "api",
- "plugins",
  "reqwest",
  "runtime",
  "serde",

rust/README.md

@@ -1,6 +1,6 @@
 # 🦞 Claw Code — Rust Implementation
 
-A high-performance Rust rewrite of the Claw Code CLI agent harness. Built for speed, safety, and native tool execution.
+A high-performance Rust rewrite of the Claude Code CLI agent harness. Built for speed, safety, and native tool execution.
 
 ## Quick Start
 

rust/crates/api/src/sse.rs

@@ -216,64 +216,4 @@ mod tests {
             ))
         );
     }
-
-    #[test]
-    fn parses_thinking_content_block_start() {
-        let frame = concat!(
-            "event: content_block_start\n",
-            "data: {\"type\":\"content_block_start\",\"index\":0,\"content_block\":{\"type\":\"thinking\",\"thinking\":\"\",\"signature\":null}}\n\n"
-        );
-
-        let event = parse_frame(frame).expect("frame should parse");
-        assert_eq!(
-            event,
-            Some(StreamEvent::ContentBlockStart(
-                crate::types::ContentBlockStartEvent {
-                    index: 0,
-                    content_block: OutputContentBlock::Thinking {
-                        thinking: String::new(),
-                        signature: None,
-                    },
-                },
-            ))
-        );
-    }
-
-    #[test]
-    fn parses_thinking_related_deltas() {
-        let thinking = concat!(
-            "event: content_block_delta\n",
-            "data: {\"type\":\"content_block_delta\",\"index\":0,\"delta\":{\"type\":\"thinking_delta\",\"thinking\":\"step 1\"}}\n\n"
-        );
-        let signature = concat!(
-            "event: content_block_delta\n",
-            "data: {\"type\":\"content_block_delta\",\"index\":0,\"delta\":{\"type\":\"signature_delta\",\"signature\":\"sig_123\"}}\n\n"
-        );
-
-        let thinking_event = parse_frame(thinking).expect("thinking delta should parse");
-        let signature_event = parse_frame(signature).expect("signature delta should parse");
-
-        assert_eq!(
-            thinking_event,
-            Some(StreamEvent::ContentBlockDelta(
-                crate::types::ContentBlockDeltaEvent {
-                    index: 0,
-                    delta: ContentBlockDelta::ThinkingDelta {
-                        thinking: "step 1".to_string(),
-                    },
-                }
-            ))
-        );
-        assert_eq!(
-            signature_event,
-            Some(StreamEvent::ContentBlockDelta(
-                crate::types::ContentBlockDeltaEvent {
-                    index: 0,
-                    delta: ContentBlockDelta::SignatureDelta {
-                        signature: "sig_123".to_string(),
-                    },
-                }
-            ))
-        );
-    }
 }

rust/crates/api/src/types.rs

@@ -135,15 +135,6 @@ pub enum OutputContentBlock {
         name: String,
         input: Value,
     },
-    Thinking {
-        #[serde(default)]
-        thinking: String,
-        #[serde(default, skip_serializing_if = "Option::is_none")]
-        signature: Option<String>,
-    },
-    RedactedThinking {
-        data: Value,
-    },
 }
 
 #[derive(Debug, Clone, PartialEq, Eq, Serialize, Deserialize)]
@@ -199,8 +190,6 @@ pub struct ContentBlockDeltaEvent {
 pub enum ContentBlockDelta {
     TextDelta { text: String },
     InputJsonDelta { partial_json: String },
-    ThinkingDelta { thinking: String },
-    SignatureDelta { signature: String },
 }
 
 #[derive(Debug, Clone, PartialEq, Eq, Serialize, Deserialize)]

rust/crates/api/tests/client_integration.rs

@@ -75,48 +75,6 @@ async fn send_message_posts_json_and_parses_response() {
     assert_eq!(body["tool_choice"]["type"], json!("auto"));
 }
 
-#[tokio::test]
-async fn send_message_parses_response_with_thinking_blocks() {
-    let state = Arc::new(Mutex::new(Vec::<CapturedRequest>::new()));
-    let body = concat!(
-        "{",
-        "\"id\":\"msg_thinking\",",
-        "\"type\":\"message\",",
-        "\"role\":\"assistant\",",
-        "\"content\":[",
-        "{\"type\":\"thinking\",\"thinking\":\"step 1\",\"signature\":\"sig_123\"},",
-        "{\"type\":\"text\",\"text\":\"Final answer\"}",
-        "],",
-        "\"model\":\"claude-3-7-sonnet-latest\",",
-        "\"stop_reason\":\"end_turn\",",
-        "\"stop_sequence\":null,",
-        "\"usage\":{\"input_tokens\":12,\"output_tokens\":4}",
-        "}"
-    );
-    let server = spawn_server(
-        state,
-        vec![http_response("200 OK", "application/json", body)],
-    )
-    .await;
-
-    let client = AnthropicClient::new("test-key").with_base_url(server.base_url());
-    let response = client
-        .send_message(&sample_request(false))
-        .await
-        .expect("request should succeed");
-
-    assert_eq!(response.content.len(), 2);
-    assert!(matches!(
-        &response.content[0],
-        OutputContentBlock::Thinking { thinking, signature }
-            if thinking == "step 1" && signature.as_deref() == Some("sig_123")
-    ));
-    assert!(matches!(
-        &response.content[1],
-        OutputContentBlock::Text { text } if text == "Final answer"
-    ));
-}
-
 #[tokio::test]
 async fn stream_message_parses_sse_events_with_tool_use() {
     let state = Arc::new(Mutex::new(Vec::<CapturedRequest>::new()));
@@ -204,85 +162,6 @@ async fn stream_message_parses_sse_events_with_tool_use() {
     assert!(request.body.contains("\"stream\":true"));
 }
 
-#[tokio::test]
-async fn stream_message_parses_sse_events_with_thinking_blocks() {
-    let state = Arc::new(Mutex::new(Vec::<CapturedRequest>::new()));
-    let sse = concat!(
-        "event: message_start\n",
-        "data: {\"type\":\"message_start\",\"message\":{\"id\":\"msg_stream_thinking\",\"type\":\"message\",\"role\":\"assistant\",\"content\":[],\"model\":\"claude-3-7-sonnet-latest\",\"stop_reason\":null,\"stop_sequence\":null,\"usage\":{\"input_tokens\":8,\"output_tokens\":0}}}\n\n",
-        "event: content_block_start\n",
-        "data: {\"type\":\"content_block_start\",\"index\":0,\"content_block\":{\"type\":\"thinking\",\"thinking\":\"\"}}\n\n",
-        "event: content_block_delta\n",
-        "data: {\"type\":\"content_block_delta\",\"index\":0,\"delta\":{\"type\":\"thinking_delta\",\"thinking\":\"step 1\"}}\n\n",
-        "event: content_block_delta\n",
-        "data: {\"type\":\"content_block_delta\",\"index\":0,\"delta\":{\"type\":\"signature_delta\",\"signature\":\"sig_123\"}}\n\n",
-        "event: content_block_stop\n",
-        "data: {\"type\":\"content_block_stop\",\"index\":0}\n\n",
-        "event: content_block_start\n",
-        "data: {\"type\":\"content_block_start\",\"index\":1,\"content_block\":{\"type\":\"text\",\"text\":\"Final answer\"}}\n\n",
-        "event: content_block_stop\n",
-        "data: {\"type\":\"content_block_stop\",\"index\":1}\n\n",
-        "event: message_delta\n",
-        "data: {\"type\":\"message_delta\",\"delta\":{\"stop_reason\":\"end_turn\",\"stop_sequence\":null},\"usage\":{\"input_tokens\":8,\"output_tokens\":1}}\n\n",
-        "event: message_stop\n",
-        "data: {\"type\":\"message_stop\"}\n\n",
-        "data: [DONE]\n\n"
-    );
-    let server = spawn_server(
-        state,
-        vec![http_response("200 OK", "text/event-stream", sse)],
-    )
-    .await;
-
-    let client = AnthropicClient::new("test-key").with_base_url(server.base_url());
-    let mut stream = client
-        .stream_message(&sample_request(false))
-        .await
-        .expect("stream should start");
-
-    let mut events = Vec::new();
-    while let Some(event) = stream
-        .next_event()
-        .await
-        .expect("stream event should parse")
-    {
-        events.push(event);
-    }
-
-    assert_eq!(events.len(), 9);
-    assert!(matches!(
-        &events[1],
-        StreamEvent::ContentBlockStart(ContentBlockStartEvent {
-            content_block: OutputContentBlock::Thinking { thinking, signature },
-            ..
-        }) if thinking.is_empty() && signature.is_none()
-    ));
-    assert!(matches!(
-        &events[2],
-        StreamEvent::ContentBlockDelta(ContentBlockDeltaEvent {
-            delta: ContentBlockDelta::ThinkingDelta { thinking },
-            ..
-        }) if thinking == "step 1"
-    ));
-    assert!(matches!(
-        &events[3],
-        StreamEvent::ContentBlockDelta(ContentBlockDeltaEvent {
-            delta: ContentBlockDelta::SignatureDelta { signature },
-            ..
-        }) if signature == "sig_123"
-    ));
-    assert!(matches!(
-        &events[5],
-        StreamEvent::ContentBlockStart(ContentBlockStartEvent {
-            content_block: OutputContentBlock::Text { text },
-            ..
-        }) if text == "Final answer"
-    ));
-    assert!(matches!(events[6], StreamEvent::ContentBlockStop(_)));
-    assert!(matches!(events[7], StreamEvent::MessageDelta(_)));
-    assert!(matches!(events[8], StreamEvent::MessageStop(_)));
-}
-
 #[tokio::test]
 async fn retries_retryable_failures_before_succeeding() {
     let state = Arc::new(Mutex::new(Vec::<CapturedRequest>::new()));

rust/crates/commands/Cargo.toml

@@ -9,5 +9,4 @@ publish.workspace = true
 workspace = true
 
 [dependencies]
-plugins = { path = "../plugins" }
 runtime = { path = "../runtime" }

rust/crates/compat-harness/src/lib.rs

@@ -70,12 +70,16 @@ fn upstream_repo_candidates(primary_repo_root: &Path) -> Vec<PathBuf> {
     }
 
     for ancestor in primary_repo_root.ancestors().take(4) {
-        candidates.push(ancestor.join("claw-code"));
+        candidates.push(ancestor.join("claude-code"));
         candidates.push(ancestor.join("clawd-code"));
     }
 
-    candidates.push(primary_repo_root.join("reference-source").join("claw-code"));
+    candidates.push(
-    candidates.push(primary_repo_root.join("vendor").join("claw-code"));
+        primary_repo_root
+            .join("reference-source")
+            .join("claude-code"),
+    );
+    candidates.push(primary_repo_root.join("vendor").join("claude-code"));
 
     let mut deduped = Vec::new();
     for candidate in candidates {

rust/crates/plugins/Cargo.toml

@@ -1,13 +0,0 @@
-[package]
-name = "plugins"
-version.workspace = true
-edition.workspace = true
-license.workspace = true
-publish.workspace = true
-
-[dependencies]
-serde = { version = "1", features = ["derive"] }
-serde_json = "1"
-
-[lints]
-workspace = true

rust/crates/plugins/bundled/example-bundled/.claude-plugin/plugin.json

@@ -1,10 +0,0 @@
-{
-  "name": "example-bundled",
-  "version": "0.1.0",
-  "description": "Example bundled plugin scaffold for the Rust plugin system",
-  "defaultEnabled": false,
-  "hooks": {
-    "PreToolUse": ["./hooks/pre.sh"],
-    "PostToolUse": ["./hooks/post.sh"]
-  }
-}

rust/crates/plugins/bundled/example-bundled/hooks/post.sh

@@ -1,2 +0,0 @@
-#!/bin/sh
-printf '%s\n' 'example bundled post hook'

rust/crates/plugins/bundled/example-bundled/hooks/pre.sh

@@ -1,2 +0,0 @@
-#!/bin/sh
-printf '%s\n' 'example bundled pre hook'

rust/crates/plugins/bundled/sample-hooks/.claude-plugin/plugin.json

@@ -1,10 +0,0 @@
-{
-  "name": "sample-hooks",
-  "version": "0.1.0",
-  "description": "Bundled sample plugin scaffold for hook integration tests.",
-  "defaultEnabled": false,
-  "hooks": {
-    "PreToolUse": ["./hooks/pre.sh"],
-    "PostToolUse": ["./hooks/post.sh"]
-  }
-}

rust/crates/plugins/bundled/sample-hooks/hooks/post.sh

@@ -1,2 +0,0 @@
-#!/bin/sh
-printf 'sample bundled post hook'

rust/crates/plugins/bundled/sample-hooks/hooks/pre.sh

@@ -1,2 +0,0 @@
-#!/bin/sh
-printf 'sample bundled pre hook'

rust/crates/plugins/src/hooks.rs

@@ -1,395 +0,0 @@
-use std::ffi::OsStr;
-use std::path::Path;
-use std::process::Command;
-
-use serde_json::json;
-
-use crate::{PluginError, PluginHooks, PluginRegistry};
-
-#[derive(Debug, Clone, Copy, PartialEq, Eq)]
-pub enum HookEvent {
-    PreToolUse,
-    PostToolUse,
-}
-
-impl HookEvent {
-    fn as_str(self) -> &'static str {
-        match self {
-            Self::PreToolUse => "PreToolUse",
-            Self::PostToolUse => "PostToolUse",
-        }
-    }
-}
-
-#[derive(Debug, Clone, PartialEq, Eq)]
-pub struct HookRunResult {
-    denied: bool,
-    messages: Vec<String>,
-}
-
-impl HookRunResult {
-    #[must_use]
-    pub fn allow(messages: Vec<String>) -> Self {
-        Self {
-            denied: false,
-            messages,
-        }
-    }
-
-    #[must_use]
-    pub fn is_denied(&self) -> bool {
-        self.denied
-    }
-
-    #[must_use]
-    pub fn messages(&self) -> &[String] {
-        &self.messages
-    }
-}
-
-#[derive(Debug, Clone, PartialEq, Eq, Default)]
-pub struct HookRunner {
-    hooks: PluginHooks,
-}
-
-impl HookRunner {
-    #[must_use]
-    pub fn new(hooks: PluginHooks) -> Self {
-        Self { hooks }
-    }
-
-    pub fn from_registry(plugin_registry: &PluginRegistry) -> Result<Self, PluginError> {
-        Ok(Self::new(plugin_registry.aggregated_hooks()?))
-    }
-
-    #[must_use]
-    pub fn run_pre_tool_use(&self, tool_name: &str, tool_input: &str) -> HookRunResult {
-        self.run_commands(
-            HookEvent::PreToolUse,
-            &self.hooks.pre_tool_use,
-            tool_name,
-            tool_input,
-            None,
-            false,
-        )
-    }
-
-    #[must_use]
-    pub fn run_post_tool_use(
-        &self,
-        tool_name: &str,
-        tool_input: &str,
-        tool_output: &str,
-        is_error: bool,
-    ) -> HookRunResult {
-        self.run_commands(
-            HookEvent::PostToolUse,
-            &self.hooks.post_tool_use,
-            tool_name,
-            tool_input,
-            Some(tool_output),
-            is_error,
-        )
-    }
-
-    fn run_commands(
-        &self,
-        event: HookEvent,
-        commands: &[String],
-        tool_name: &str,
-        tool_input: &str,
-        tool_output: Option<&str>,
-        is_error: bool,
-    ) -> HookRunResult {
-        if commands.is_empty() {
-            return HookRunResult::allow(Vec::new());
-        }
-
-        let payload = json!({
-            "hook_event_name": event.as_str(),
-            "tool_name": tool_name,
-            "tool_input": parse_tool_input(tool_input),
-            "tool_input_json": tool_input,
-            "tool_output": tool_output,
-            "tool_result_is_error": is_error,
-        })
-        .to_string();
-
-        let mut messages = Vec::new();
-
-        for command in commands {
-            match self.run_command(
-                command,
-                event,
-                tool_name,
-                tool_input,
-                tool_output,
-                is_error,
-                &payload,
-            ) {
-                HookCommandOutcome::Allow { message } => {
-                    if let Some(message) = message {
-                        messages.push(message);
-                    }
-                }
-                HookCommandOutcome::Deny { message } => {
-                    messages.push(message.unwrap_or_else(|| {
-                        format!("{} hook denied tool `{tool_name}`", event.as_str())
-                    }));
-                    return HookRunResult {
-                        denied: true,
-                        messages,
-                    };
-                }
-                HookCommandOutcome::Warn { message } => messages.push(message),
-            }
-        }
-
-        HookRunResult::allow(messages)
-    }
-
-    #[allow(clippy::too_many_arguments, clippy::unused_self)]
-    fn run_command(
-        &self,
-        command: &str,
-        event: HookEvent,
-        tool_name: &str,
-        tool_input: &str,
-        tool_output: Option<&str>,
-        is_error: bool,
-        payload: &str,
-    ) -> HookCommandOutcome {
-        let mut child = shell_command(command);
-        child.stdin(std::process::Stdio::piped());
-        child.stdout(std::process::Stdio::piped());
-        child.stderr(std::process::Stdio::piped());
-        child.env("HOOK_EVENT", event.as_str());
-        child.env("HOOK_TOOL_NAME", tool_name);
-        child.env("HOOK_TOOL_INPUT", tool_input);
-        child.env("HOOK_TOOL_IS_ERROR", if is_error { "1" } else { "0" });
-        if let Some(tool_output) = tool_output {
-            child.env("HOOK_TOOL_OUTPUT", tool_output);
-        }
-
-        match child.output_with_stdin(payload.as_bytes()) {
-            Ok(output) => {
-                let stdout = String::from_utf8_lossy(&output.stdout).trim().to_string();
-                let stderr = String::from_utf8_lossy(&output.stderr).trim().to_string();
-                let message = (!stdout.is_empty()).then_some(stdout);
-                match output.status.code() {
-                    Some(0) => HookCommandOutcome::Allow { message },
-                    Some(2) => HookCommandOutcome::Deny { message },
-                    Some(code) => HookCommandOutcome::Warn {
-                        message: format_hook_warning(
-                            command,
-                            code,
-                            message.as_deref(),
-                            stderr.as_str(),
-                        ),
-                    },
-                    None => HookCommandOutcome::Warn {
-                        message: format!(
-                            "{} hook `{command}` terminated by signal while handling `{tool_name}`",
-                            event.as_str()
-                        ),
-                    },
-                }
-            }
-            Err(error) => HookCommandOutcome::Warn {
-                message: format!(
-                    "{} hook `{command}` failed to start for `{tool_name}`: {error}",
-                    event.as_str()
-                ),
-            },
-        }
-    }
-}
-
-enum HookCommandOutcome {
-    Allow { message: Option<String> },
-    Deny { message: Option<String> },
-    Warn { message: String },
-}
-
-fn parse_tool_input(tool_input: &str) -> serde_json::Value {
-    serde_json::from_str(tool_input).unwrap_or_else(|_| json!({ "raw": tool_input }))
-}
-
-fn format_hook_warning(command: &str, code: i32, stdout: Option<&str>, stderr: &str) -> String {
-    let mut message =
-        format!("Hook `{command}` exited with status {code}; allowing tool execution to continue");
-    if let Some(stdout) = stdout.filter(|stdout| !stdout.is_empty()) {
-        message.push_str(": ");
-        message.push_str(stdout);
-    } else if !stderr.is_empty() {
-        message.push_str(": ");
-        message.push_str(stderr);
-    }
-    message
-}
-
-fn shell_command(command: &str) -> CommandWithStdin {
-    #[cfg(windows)]
-    let command_builder = {
-        let mut command_builder = Command::new("cmd");
-        command_builder.arg("/C").arg(command);
-        CommandWithStdin::new(command_builder)
-    };
-
-    #[cfg(not(windows))]
-    let command_builder = if Path::new(command).exists() {
-        let mut command_builder = Command::new("sh");
-        command_builder.arg(command);
-        CommandWithStdin::new(command_builder)
-    } else {
-        let mut command_builder = Command::new("sh");
-        command_builder.arg("-lc").arg(command);
-        CommandWithStdin::new(command_builder)
-    };
-
-    command_builder
-}
-
-struct CommandWithStdin {
-    command: Command,
-}
-
-impl CommandWithStdin {
-    fn new(command: Command) -> Self {
-        Self { command }
-    }
-
-    fn stdin(&mut self, cfg: std::process::Stdio) -> &mut Self {
-        self.command.stdin(cfg);
-        self
-    }
-
-    fn stdout(&mut self, cfg: std::process::Stdio) -> &mut Self {
-        self.command.stdout(cfg);
-        self
-    }
-
-    fn stderr(&mut self, cfg: std::process::Stdio) -> &mut Self {
-        self.command.stderr(cfg);
-        self
-    }
-
-    fn env<K, V>(&mut self, key: K, value: V) -> &mut Self
-    where
-        K: AsRef<OsStr>,
-        V: AsRef<OsStr>,
-    {
-        self.command.env(key, value);
-        self
-    }
-
-    fn output_with_stdin(&mut self, stdin: &[u8]) -> std::io::Result<std::process::Output> {
-        let mut child = self.command.spawn()?;
-        if let Some(mut child_stdin) = child.stdin.take() {
-            use std::io::Write as _;
-            child_stdin.write_all(stdin)?;
-        }
-        child.wait_with_output()
-    }
-}
-
-#[cfg(test)]
-mod tests {
-    use super::{HookRunResult, HookRunner};
-    use crate::{PluginManager, PluginManagerConfig};
-    use std::fs;
-    use std::path::{Path, PathBuf};
-    use std::time::{SystemTime, UNIX_EPOCH};
-
-    fn temp_dir(label: &str) -> PathBuf {
-        let nanos = SystemTime::now()
-            .duration_since(UNIX_EPOCH)
-            .expect("time should be after epoch")
-            .as_nanos();
-        std::env::temp_dir().join(format!("plugins-hook-runner-{label}-{nanos}"))
-    }
-
-    fn write_hook_plugin(root: &Path, name: &str, pre_message: &str, post_message: &str) {
-        fs::create_dir_all(root.join(".claude-plugin")).expect("manifest dir");
-        fs::create_dir_all(root.join("hooks")).expect("hooks dir");
-        fs::write(
-            root.join("hooks").join("pre.sh"),
-            format!("#!/bin/sh\nprintf '%s\\n' '{pre_message}'\n"),
-        )
-        .expect("write pre hook");
-        fs::write(
-            root.join("hooks").join("post.sh"),
-            format!("#!/bin/sh\nprintf '%s\\n' '{post_message}'\n"),
-        )
-        .expect("write post hook");
-        fs::write(
-            root.join(".claude-plugin").join("plugin.json"),
-            format!(
-                "{{\n  \"name\": \"{name}\",\n  \"version\": \"1.0.0\",\n  \"description\": \"hook plugin\",\n  \"hooks\": {{\n    \"PreToolUse\": [\"./hooks/pre.sh\"],\n    \"PostToolUse\": [\"./hooks/post.sh\"]\n  }}\n}}"
-            ),
-        )
-        .expect("write plugin manifest");
-    }
-
-    #[test]
-    fn collects_and_runs_hooks_from_enabled_plugins() {
-        let config_home = temp_dir("config");
-        let first_source_root = temp_dir("source-a");
-        let second_source_root = temp_dir("source-b");
-        write_hook_plugin(
-            &first_source_root,
-            "first",
-            "plugin pre one",
-            "plugin post one",
-        );
-        write_hook_plugin(
-            &second_source_root,
-            "second",
-            "plugin pre two",
-            "plugin post two",
-        );
-
-        let mut manager = PluginManager::new(PluginManagerConfig::new(&config_home));
-        manager
-            .install(first_source_root.to_str().expect("utf8 path"))
-            .expect("first plugin install should succeed");
-        manager
-            .install(second_source_root.to_str().expect("utf8 path"))
-            .expect("second plugin install should succeed");
-        let registry = manager.plugin_registry().expect("registry should build");
-
-        let runner = HookRunner::from_registry(&registry).expect("plugin hooks should load");
-
-        assert_eq!(
-            runner.run_pre_tool_use("Read", r#"{"path":"README.md"}"#),
-            HookRunResult::allow(vec![
-                "plugin pre one".to_string(),
-                "plugin pre two".to_string(),
-            ])
-        );
-        assert_eq!(
-            runner.run_post_tool_use("Read", r#"{"path":"README.md"}"#, "ok", false),
-            HookRunResult::allow(vec![
-                "plugin post one".to_string(),
-                "plugin post two".to_string(),
-            ])
-        );
-
-        let _ = fs::remove_dir_all(config_home);
-        let _ = fs::remove_dir_all(first_source_root);
-        let _ = fs::remove_dir_all(second_source_root);
-    }
-
-    #[test]
-    fn pre_tool_use_denies_when_plugin_hook_exits_two() {
-        let runner = HookRunner::new(crate::PluginHooks {
-            pre_tool_use: vec!["printf 'blocked by plugin'; exit 2".to_string()],
-            post_tool_use: Vec::new(),
-        });
-
-        let result = runner.run_pre_tool_use("Bash", r#"{"command":"pwd"}"#);
-
-        assert!(result.is_denied());
-        assert_eq!(result.messages(), &["blocked by plugin".to_string()]);
-    }
-}

rust/crates/runtime/Cargo.toml

@@ -8,7 +8,6 @@ publish.workspace = true
 [dependencies]
 sha2 = "0.10"
 glob = "0.3"
-plugins = { path = "../plugins" }
 regex = "1"
 serde = { version = "1", features = ["derive"] }
 serde_json = "1"

rust/crates/runtime/src/compact.rs

@@ -1,10 +1,5 @@
 use crate::session::{ContentBlock, ConversationMessage, MessageRole, Session};
 
-const COMPACT_CONTINUATION_PREAMBLE: &str =
-    "This session is being continued from a previous conversation that ran out of context. The summary below covers the earlier portion of the conversation.\n\n";
-const COMPACT_RECENT_MESSAGES_NOTE: &str = "Recent messages are preserved verbatim.";
-const COMPACT_DIRECT_RESUME_INSTRUCTION: &str = "Continue the conversation from where it left off without asking the user any further questions. Resume directly — do not acknowledge the summary, do not recap what was happening, and do not preface with continuation text.";
-
 #[derive(Debug, Clone, Copy, PartialEq, Eq)]
 pub struct CompactionConfig {
     pub preserve_recent_messages: usize,
@@ -35,15 +30,8 @@ pub fn estimate_session_tokens(session: &Session) -> usize {
 
 #[must_use]
 pub fn should_compact(session: &Session, config: CompactionConfig) -> bool {
-    let start = compacted_summary_prefix_len(session);
+    session.messages.len() > config.preserve_recent_messages
-    let compactable = &session.messages[start..];
+        && estimate_session_tokens(session) >= config.max_estimated_tokens
-
-    compactable.len() > config.preserve_recent_messages
-        && compactable
-            .iter()
-            .map(estimate_message_tokens)
-            .sum::<usize>()
-            >= config.max_estimated_tokens
 }
 
 #[must_use]
@@ -68,18 +56,16 @@ pub fn get_compact_continuation_message(
     recent_messages_preserved: bool,
 ) -> String {
     let mut base = format!(
-        "{COMPACT_CONTINUATION_PREAMBLE}{}",
+        "This session is being continued from a previous conversation that ran out of context. The summary below covers the earlier portion of the conversation.\n\n{}",
         format_compact_summary(summary)
     );
 
     if recent_messages_preserved {
-        base.push_str("\n\n");
+        base.push_str("\n\nRecent messages are preserved verbatim.");
-        base.push_str(COMPACT_RECENT_MESSAGES_NOTE);
     }
 
     if suppress_follow_up_questions {
-        base.push('\n');
+        base.push_str("\nContinue the conversation from where it left off without asking the user any further questions. Resume directly — do not acknowledge the summary, do not recap what was happening, and do not preface with continuation text.");
-        base.push_str(COMPACT_DIRECT_RESUME_INSTRUCTION);
     }
 
     base
@@ -96,19 +82,13 @@ pub fn compact_session(session: &Session, config: CompactionConfig) -> Compactio
         };
     }
 
-    let existing_summary = session
-        .messages
-        .first()
-        .and_then(extract_existing_compacted_summary);
-    let compacted_prefix_len = usize::from(existing_summary.is_some());
     let keep_from = session
         .messages
         .len()
         .saturating_sub(config.preserve_recent_messages);
-    let removed = &session.messages[compacted_prefix_len..keep_from];
+    let removed = &session.messages[..keep_from];
     let preserved = session.messages[keep_from..].to_vec();
-    let summary =
+    let summary = summarize_messages(removed);
-        merge_compact_summaries(existing_summary.as_deref(), &summarize_messages(removed));
     let formatted_summary = format_compact_summary(&summary);
     let continuation = get_compact_continuation_message(&summary, true, !preserved.is_empty());
 
@@ -119,27 +99,18 @@ pub fn compact_session(session: &Session, config: CompactionConfig) -> Compactio
     }];
     compacted_messages.extend(preserved);
 
+    let mut compacted_session = session.clone();
+    compacted_session.messages = compacted_messages;
+    compacted_session.record_compaction(summary.clone(), removed.len());
+
     CompactionResult {
         summary,
         formatted_summary,
-        compacted_session: Session {
+        compacted_session,
-            version: session.version,
-            messages: compacted_messages,
-        },
         removed_message_count: removed.len(),
     }
 }
 
-fn compacted_summary_prefix_len(session: &Session) -> usize {
-    usize::from(
-        session
-            .messages
-            .first()
-            .and_then(extract_existing_compacted_summary)
-            .is_some(),
-    )
-}
-
 fn summarize_messages(messages: &[ConversationMessage]) -> String {
     let user_messages = messages
         .iter()
@@ -227,41 +198,6 @@ fn summarize_messages(messages: &[ConversationMessage]) -> String {
     lines.join("\n")
 }
 
-fn merge_compact_summaries(existing_summary: Option<&str>, new_summary: &str) -> String {
-    let Some(existing_summary) = existing_summary else {
-        return new_summary.to_string();
-    };
-
-    let previous_highlights = extract_summary_highlights(existing_summary);
-    let new_formatted_summary = format_compact_summary(new_summary);
-    let new_highlights = extract_summary_highlights(&new_formatted_summary);
-    let new_timeline = extract_summary_timeline(&new_formatted_summary);
-
-    let mut lines = vec!["<summary>".to_string(), "Conversation summary:".to_string()];
-
-    if !previous_highlights.is_empty() {
-        lines.push("- Previously compacted context:".to_string());
-        lines.extend(
-            previous_highlights
-                .into_iter()
-                .map(|line| format!("  {line}")),
-        );
-    }
-
-    if !new_highlights.is_empty() {
-        lines.push("- Newly compacted context:".to_string());
-        lines.extend(new_highlights.into_iter().map(|line| format!("  {line}")));
-    }
-
-    if !new_timeline.is_empty() {
-        lines.push("- Key timeline:".to_string());
-        lines.extend(new_timeline.into_iter().map(|line| format!("  {line}")));
-    }
-
-    lines.push("</summary>".to_string());
-    lines.join("\n")
-}
-
 fn summarize_block(block: &ContentBlock) -> String {
     let raw = match block {
         ContentBlock::Text { text } => text.clone(),
@@ -439,71 +375,11 @@ fn collapse_blank_lines(content: &str) -> String {
     result
 }
 
-fn extract_existing_compacted_summary(message: &ConversationMessage) -> Option<String> {
-    if message.role != MessageRole::System {
-        return None;
-    }
-
-    let text = first_text_block(message)?;
-    let summary = text.strip_prefix(COMPACT_CONTINUATION_PREAMBLE)?;
-    let summary = summary
-        .split_once(&format!("\n\n{COMPACT_RECENT_MESSAGES_NOTE}"))
-        .map_or(summary, |(value, _)| value);
-    let summary = summary
-        .split_once(&format!("\n{COMPACT_DIRECT_RESUME_INSTRUCTION}"))
-        .map_or(summary, |(value, _)| value);
-    Some(summary.trim().to_string())
-}
-
-fn extract_summary_highlights(summary: &str) -> Vec<String> {
-    let mut lines = Vec::new();
-    let mut in_timeline = false;
-
-    for line in format_compact_summary(summary).lines() {
-        let trimmed = line.trim_end();
-        if trimmed.is_empty() || trimmed == "Summary:" || trimmed == "Conversation summary:" {
-            continue;
-        }
-        if trimmed == "- Key timeline:" {
-            in_timeline = true;
-            continue;
-        }
-        if in_timeline {
-            continue;
-        }
-        lines.push(trimmed.to_string());
-    }
-
-    lines
-}
-
-fn extract_summary_timeline(summary: &str) -> Vec<String> {
-    let mut lines = Vec::new();
-    let mut in_timeline = false;
-
-    for line in format_compact_summary(summary).lines() {
-        let trimmed = line.trim_end();
-        if trimmed == "- Key timeline:" {
-            in_timeline = true;
-            continue;
-        }
-        if !in_timeline {
-            continue;
-        }
-        if trimmed.is_empty() {
-            break;
-        }
-        lines.push(trimmed.to_string());
-    }
-
-    lines
-}
-
 #[cfg(test)]
 mod tests {
     use super::{
         collect_key_files, compact_session, estimate_session_tokens, format_compact_summary,
-        get_compact_continuation_message, infer_pending_work, should_compact, CompactionConfig,
+        infer_pending_work, should_compact, CompactionConfig,
     };
     use crate::session::{ContentBlock, ConversationMessage, MessageRole, Session};
 
@@ -515,10 +391,8 @@ mod tests {
 
     #[test]
     fn leaves_small_sessions_unchanged() {
-        let session = Session {
+        let mut session = Session::new();
-            version: 1,
+        session.messages = vec![ConversationMessage::user_text("hello")];
-            messages: vec![ConversationMessage::user_text("hello")],
-        };
 
         let result = compact_session(&session, CompactionConfig::default());
         assert_eq!(result.removed_message_count, 0);
@@ -529,9 +403,8 @@ mod tests {
 
     #[test]
     fn compacts_older_messages_into_a_system_summary() {
-        let session = Session {
+        let mut session = Session::new();
-            version: 1,
+        session.messages = vec![
-            messages: vec![
             ConversationMessage::user_text("one ".repeat(200)),
             ConversationMessage::assistant(vec![ContentBlock::Text {
                 text: "two ".repeat(200),
@@ -544,8 +417,7 @@ mod tests {
                 }],
                 usage: None,
             },
-            ],
+        ];
-        };
 
         let result = compact_session(
             &session,
@@ -578,98 +450,6 @@ mod tests {
         );
     }
 
-    #[test]
-    fn keeps_previous_compacted_context_when_compacting_again() {
-        let initial_session = Session {
-            version: 1,
-            messages: vec![
-                ConversationMessage::user_text("Investigate rust/crates/runtime/src/compact.rs"),
-                ConversationMessage::assistant(vec![ContentBlock::Text {
-                    text: "I will inspect the compact flow.".to_string(),
-                }]),
-                ConversationMessage::user_text(
-                    "Also update rust/crates/runtime/src/conversation.rs",
-                ),
-                ConversationMessage::assistant(vec![ContentBlock::Text {
-                    text: "Next: preserve prior summary context during auto compact.".to_string(),
-                }]),
-            ],
-        };
-        let config = CompactionConfig {
-            preserve_recent_messages: 2,
-            max_estimated_tokens: 1,
-        };
-
-        let first = compact_session(&initial_session, config);
-        let mut follow_up_messages = first.compacted_session.messages.clone();
-        follow_up_messages.extend([
-            ConversationMessage::user_text("Please add regression tests for compaction."),
-            ConversationMessage::assistant(vec![ContentBlock::Text {
-                text: "Working on regression coverage now.".to_string(),
-            }]),
-        ]);
-
-        let second = compact_session(
-            &Session {
-                version: 1,
-                messages: follow_up_messages,
-            },
-            config,
-        );
-
-        assert!(second
-            .formatted_summary
-            .contains("Previously compacted context:"));
-        assert!(second
-            .formatted_summary
-            .contains("Scope: 2 earlier messages compacted"));
-        assert!(second
-            .formatted_summary
-            .contains("Newly compacted context:"));
-        assert!(second
-            .formatted_summary
-            .contains("Also update rust/crates/runtime/src/conversation.rs"));
-        assert!(matches!(
-            &second.compacted_session.messages[0].blocks[0],
-            ContentBlock::Text { text }
-                if text.contains("Previously compacted context:")
-                    && text.contains("Newly compacted context:")
-        ));
-        assert!(matches!(
-            &second.compacted_session.messages[1].blocks[0],
-            ContentBlock::Text { text } if text.contains("Please add regression tests for compaction.")
-        ));
-    }
-
-    #[test]
-    fn ignores_existing_compacted_summary_when_deciding_to_recompact() {
-        let summary = "<summary>Conversation summary:\n- Scope: earlier work preserved.\n- Key timeline:\n  - user: large preserved context\n</summary>";
-        let session = Session {
-            version: 1,
-            messages: vec![
-                ConversationMessage {
-                    role: MessageRole::System,
-                    blocks: vec![ContentBlock::Text {
-                        text: get_compact_continuation_message(summary, true, true),
-                    }],
-                    usage: None,
-                },
-                ConversationMessage::user_text("tiny"),
-                ConversationMessage::assistant(vec![ContentBlock::Text {
-                    text: "recent".to_string(),
-                }]),
-            ],
-        };
-
-        assert!(!should_compact(
-            &session,
-            CompactionConfig {
-                preserve_recent_messages: 2,
-                max_estimated_tokens: 1,
-            }
-        ));
-    }
-
     #[test]
     fn truncates_long_blocks_in_summary() {
         let summary = super::summarize_block(&ContentBlock::Text {

rust/crates/runtime/src/config.rs

@@ -35,19 +35,9 @@ pub struct RuntimeConfig {
     feature_config: RuntimeFeatureConfig,
 }
 
-#[derive(Debug, Clone, PartialEq, Eq, Default)]
-pub struct RuntimePluginConfig {
-    enabled_plugins: BTreeMap<String, bool>,
-    external_directories: Vec<String>,
-    install_root: Option<String>,
-    registry_path: Option<String>,
-    bundled_root: Option<String>,
-}
-
 #[derive(Debug, Clone, PartialEq, Eq, Default)]
 pub struct RuntimeFeatureConfig {
     hooks: RuntimeHookConfig,
-    plugins: RuntimePluginConfig,
     mcp: McpConfigCollection,
     oauth: Option<OAuthConfig>,
     model: Option<String>,
@@ -184,15 +174,13 @@ impl ConfigLoader {
     #[must_use]
     pub fn default_for(cwd: impl Into<PathBuf>) -> Self {
         let cwd = cwd.into();
-        let config_home = default_config_home();
+        let config_home = std::env::var_os("CLAUDE_CONFIG_HOME")
+            .map(PathBuf::from)
+            .or_else(|| std::env::var_os("HOME").map(|home| PathBuf::from(home).join(".claude")))
+            .unwrap_or_else(|| PathBuf::from(".claude"));
         Self { cwd, config_home }
     }
 
-    #[must_use]
-    pub fn config_home(&self) -> &Path {
-        &self.config_home
-    }
-
     #[must_use]
     pub fn discover(&self) -> Vec<ConfigEntry> {
         let user_legacy_path = self.config_home.parent().map_or_else(
@@ -241,7 +229,6 @@ impl ConfigLoader {
 
         let feature_config = RuntimeFeatureConfig {
             hooks: parse_optional_hooks_config(&merged_value)?,
-            plugins: parse_optional_plugin_config(&merged_value)?,
             mcp: McpConfigCollection {
                 servers: mcp_servers,
             },
@@ -304,11 +291,6 @@ impl RuntimeConfig {
         &self.feature_config.hooks
     }
 
-    #[must_use]
-    pub fn plugins(&self) -> &RuntimePluginConfig {
-        &self.feature_config.plugins
-    }
-
     #[must_use]
     pub fn oauth(&self) -> Option<&OAuthConfig> {
         self.feature_config.oauth.as_ref()
@@ -337,22 +319,11 @@ impl RuntimeFeatureConfig {
         self
     }
 
-    #[must_use]
-    pub fn with_plugins(mut self, plugins: RuntimePluginConfig) -> Self {
-        self.plugins = plugins;
-        self
-    }
-
     #[must_use]
     pub fn hooks(&self) -> &RuntimeHookConfig {
         &self.hooks
     }
 
-    #[must_use]
-    pub fn plugins(&self) -> &RuntimePluginConfig {
-        &self.plugins
-    }
-
     #[must_use]
     pub fn mcp(&self) -> &McpConfigCollection {
         &self.mcp
@@ -379,53 +350,6 @@ impl RuntimeFeatureConfig {
     }
 }
 
-impl RuntimePluginConfig {
-    #[must_use]
-    pub fn enabled_plugins(&self) -> &BTreeMap<String, bool> {
-        &self.enabled_plugins
-    }
-
-    #[must_use]
-    pub fn external_directories(&self) -> &[String] {
-        &self.external_directories
-    }
-
-    #[must_use]
-    pub fn install_root(&self) -> Option<&str> {
-        self.install_root.as_deref()
-    }
-
-    #[must_use]
-    pub fn registry_path(&self) -> Option<&str> {
-        self.registry_path.as_deref()
-    }
-
-    #[must_use]
-    pub fn bundled_root(&self) -> Option<&str> {
-        self.bundled_root.as_deref()
-    }
-
-    pub fn set_plugin_state(&mut self, plugin_id: String, enabled: bool) {
-        self.enabled_plugins.insert(plugin_id, enabled);
-    }
-
-    #[must_use]
-    pub fn state_for(&self, plugin_id: &str, default_enabled: bool) -> bool {
-        self.enabled_plugins
-            .get(plugin_id)
-            .copied()
-            .unwrap_or(default_enabled)
-    }
-}
-
-#[must_use]
-pub fn default_config_home() -> PathBuf {
-    std::env::var_os("CLAUDE_CONFIG_HOME")
-        .map(PathBuf::from)
-        .or_else(|| std::env::var_os("HOME").map(|home| PathBuf::from(home).join(".claude")))
-        .unwrap_or_else(|| PathBuf::from(".claude"))
-}
-
 impl RuntimeHookConfig {
     #[must_use]
     pub fn new(pre_tool_use: Vec<String>, post_tool_use: Vec<String>) -> Self {
@@ -444,18 +368,6 @@ impl RuntimeHookConfig {
     pub fn post_tool_use(&self) -> &[String] {
         &self.post_tool_use
     }
-
-    #[must_use]
-    pub fn merged(&self, other: &Self) -> Self {
-        let mut merged = self.clone();
-        merged.extend(other);
-        merged
-    }
-
-    pub fn extend(&mut self, other: &Self) {
-        extend_unique(&mut self.pre_tool_use, other.pre_tool_use());
-        extend_unique(&mut self.post_tool_use, other.post_tool_use());
-    }
 }
 
 impl McpConfigCollection {
@@ -572,36 +484,6 @@ fn parse_optional_hooks_config(root: &JsonValue) -> Result<RuntimeHookConfig, Co
     })
 }
 
-fn parse_optional_plugin_config(root: &JsonValue) -> Result<RuntimePluginConfig, ConfigError> {
-    let Some(object) = root.as_object() else {
-        return Ok(RuntimePluginConfig::default());
-    };
-
-    let mut config = RuntimePluginConfig::default();
-    if let Some(enabled_plugins) = object.get("enabledPlugins") {
-        config.enabled_plugins = parse_bool_map(enabled_plugins, "merged settings.enabledPlugins")?;
-    }
-
-    let Some(plugins_value) = object.get("plugins") else {
-        return Ok(config);
-    };
-    let plugins = expect_object(plugins_value, "merged settings.plugins")?;
-
-    if let Some(enabled_value) = plugins.get("enabled") {
-        config.enabled_plugins = parse_bool_map(enabled_value, "merged settings.plugins.enabled")?;
-    }
-    config.external_directories =
-        optional_string_array(plugins, "externalDirectories", "merged settings.plugins")?
-            .unwrap_or_default();
-    config.install_root =
-        optional_string(plugins, "installRoot", "merged settings.plugins")?.map(str::to_string);
-    config.registry_path =
-        optional_string(plugins, "registryPath", "merged settings.plugins")?.map(str::to_string);
-    config.bundled_root =
-        optional_string(plugins, "bundledRoot", "merged settings.plugins")?.map(str::to_string);
-    Ok(config)
-}
-
 fn parse_optional_permission_mode(
     root: &JsonValue,
 ) -> Result<Option<ResolvedPermissionMode>, ConfigError> {
@@ -834,24 +716,6 @@ fn optional_u16(
     }
 }
 
-fn parse_bool_map(value: &JsonValue, context: &str) -> Result<BTreeMap<String, bool>, ConfigError> {
-    let Some(map) = value.as_object() else {
-        return Err(ConfigError::Parse(format!(
-            "{context}: expected JSON object"
-        )));
-    };
-    map.iter()
-        .map(|(key, value)| {
-            value
-                .as_bool()
-                .map(|enabled| (key.clone(), enabled))
-                .ok_or_else(|| {
-                    ConfigError::Parse(format!("{context}: field {key} must be a boolean"))
-                })
-        })
-        .collect()
-}
-
 fn optional_string_array(
     object: &BTreeMap<String, JsonValue>,
     key: &str,
@@ -926,18 +790,6 @@ fn deep_merge_objects(
     }
 }
 
-fn extend_unique(target: &mut Vec<String>, values: &[String]) {
-    for value in values {
-        push_unique(target, value.clone());
-    }
-}
-
-fn push_unique(target: &mut Vec<String>, value: String) {
-    if !target.iter().any(|existing| existing == &value) {
-        target.push(value);
-    }
-}
-
 #[cfg(test)]
 mod tests {
     use super::{
@@ -1181,96 +1033,6 @@ mod tests {
         fs::remove_dir_all(root).expect("cleanup temp dir");
     }
 
-    #[test]
-    fn parses_plugin_config_from_enabled_plugins() {
-        let root = temp_dir();
-        let cwd = root.join("project");
-        let home = root.join("home").join(".claude");
-        fs::create_dir_all(cwd.join(".claude")).expect("project config dir");
-        fs::create_dir_all(&home).expect("home config dir");
-
-        fs::write(
-            home.join("settings.json"),
-            r#"{
-              "enabledPlugins": {
-                "tool-guard@builtin": true,
-                "sample-plugin@external": false
-              }
-            }"#,
-        )
-        .expect("write user settings");
-
-        let loaded = ConfigLoader::new(&cwd, &home)
-            .load()
-            .expect("config should load");
-
-        assert_eq!(
-            loaded.plugins().enabled_plugins().get("tool-guard@builtin"),
-            Some(&true)
-        );
-        assert_eq!(
-            loaded
-                .plugins()
-                .enabled_plugins()
-                .get("sample-plugin@external"),
-            Some(&false)
-        );
-
-        fs::remove_dir_all(root).expect("cleanup temp dir");
-    }
-
-    #[test]
-    fn parses_plugin_config() {
-        let root = temp_dir();
-        let cwd = root.join("project");
-        let home = root.join("home").join(".claude");
-        fs::create_dir_all(cwd.join(".claude")).expect("project config dir");
-        fs::create_dir_all(&home).expect("home config dir");
-
-        fs::write(
-            home.join("settings.json"),
-            r#"{
-              "enabledPlugins": {
-                "core-helpers@builtin": true
-              },
-              "plugins": {
-                "externalDirectories": ["./external-plugins"],
-                "installRoot": "plugin-cache/installed",
-                "registryPath": "plugin-cache/installed.json",
-                "bundledRoot": "./bundled-plugins"
-              }
-            }"#,
-        )
-        .expect("write plugin settings");
-
-        let loaded = ConfigLoader::new(&cwd, &home)
-            .load()
-            .expect("config should load");
-
-        assert_eq!(
-            loaded
-                .plugins()
-                .enabled_plugins()
-                .get("core-helpers@builtin"),
-            Some(&true)
-        );
-        assert_eq!(
-            loaded.plugins().external_directories(),
-            &["./external-plugins".to_string()]
-        );
-        assert_eq!(
-            loaded.plugins().install_root(),
-            Some("plugin-cache/installed")
-        );
-        assert_eq!(
-            loaded.plugins().registry_path(),
-            Some("plugin-cache/installed.json")
-        );
-        assert_eq!(loaded.plugins().bundled_root(), Some("./bundled-plugins"));
-
-        fs::remove_dir_all(root).expect("cleanup temp dir");
-    }
-
     #[test]
     fn rejects_invalid_mcp_server_shapes() {
         let root = temp_dir();

rust/crates/runtime/src/conversation.rs

@@ -1,20 +1,15 @@
 use std::collections::BTreeMap;
 use std::fmt::{Display, Formatter};
 
-use plugins::{HookRunner as PluginHookRunner, PluginRegistry};
-
 use crate::compact::{
     compact_session, estimate_session_tokens, CompactionConfig, CompactionResult,
 };
 use crate::config::RuntimeFeatureConfig;
-use crate::hooks::HookRunner;
+use crate::hooks::{HookRunResult, HookRunner};
 use crate::permissions::{PermissionOutcome, PermissionPolicy, PermissionPrompter};
 use crate::session::{ContentBlock, ConversationMessage, Session};
 use crate::usage::{TokenUsage, UsageTracker};
 
-const DEFAULT_AUTO_COMPACTION_INPUT_TOKENS_THRESHOLD: u32 = 200_000;
-const AUTO_COMPACTION_THRESHOLD_ENV_VAR: &str = "CLAUDE_CODE_AUTO_COMPACT_INPUT_TOKENS";
-
 #[derive(Debug, Clone, PartialEq, Eq)]
 pub struct ApiRequest {
     pub system_prompt: Vec<String>,
@@ -91,12 +86,6 @@ pub struct TurnSummary {
     pub tool_results: Vec<ConversationMessage>,
     pub iterations: usize,
     pub usage: TokenUsage,
-    pub auto_compaction: Option<AutoCompactionEvent>,
-}
-
-#[derive(Debug, Clone, Copy, PartialEq, Eq)]
-pub struct AutoCompactionEvent {
-    pub removed_message_count: usize,
 }
 
 pub struct ConversationRuntime<C, T> {
@@ -108,25 +97,6 @@ pub struct ConversationRuntime<C, T> {
     max_iterations: usize,
     usage_tracker: UsageTracker,
     hook_runner: HookRunner,
-    auto_compaction_input_tokens_threshold: u32,
-    plugin_hook_runner: Option<PluginHookRunner>,
-    plugin_registry: Option<PluginRegistry>,
-    plugins_shutdown: bool,
-}
-
-impl<C, T> ConversationRuntime<C, T> {
-    fn shutdown_registered_plugins(&mut self) -> Result<(), RuntimeError> {
-        if self.plugins_shutdown {
-            return Ok(());
-        }
-        if let Some(registry) = &self.plugin_registry {
-            registry
-                .shutdown()
-                .map_err(|error| RuntimeError::new(format!("plugin shutdown failed: {error}")))?;
-        }
-        self.plugins_shutdown = true;
-        Ok(())
-    }
 }
 
 impl<C, T> ConversationRuntime<C, T>
@@ -153,7 +123,6 @@ where
     }
 
     #[must_use]
-    #[allow(clippy::needless_pass_by_value)]
     pub fn new_with_features(
         session: Session,
         api_client: C,
@@ -172,69 +141,27 @@ where
             max_iterations: usize::MAX,
             usage_tracker,
             hook_runner: HookRunner::from_feature_config(&feature_config),
-            auto_compaction_input_tokens_threshold: auto_compaction_threshold_from_env(),
-            plugin_hook_runner: None,
-            plugin_registry: None,
-            plugins_shutdown: false,
         }
     }
 
-    #[allow(clippy::needless_pass_by_value)]
-    pub fn new_with_plugins(
-        session: Session,
-        api_client: C,
-        tool_executor: T,
-        permission_policy: PermissionPolicy,
-        system_prompt: Vec<String>,
-        feature_config: RuntimeFeatureConfig,
-        plugin_registry: PluginRegistry,
-    ) -> Result<Self, RuntimeError> {
-        let plugin_hook_runner =
-            PluginHookRunner::from_registry(&plugin_registry).map_err(|error| {
-                RuntimeError::new(format!("plugin hook registration failed: {error}"))
-            })?;
-        plugin_registry
-            .initialize()
-            .map_err(|error| RuntimeError::new(format!("plugin initialization failed: {error}")))?;
-        let mut runtime = Self::new_with_features(
-            session,
-            api_client,
-            tool_executor,
-            permission_policy,
-            system_prompt,
-            feature_config,
-        );
-        runtime.plugin_hook_runner = Some(plugin_hook_runner);
-        runtime.plugin_registry = Some(plugin_registry);
-        Ok(runtime)
-    }
-
     #[must_use]
     pub fn with_max_iterations(mut self, max_iterations: usize) -> Self {
         self.max_iterations = max_iterations;
         self
     }
 
-    #[must_use]
-    pub fn with_auto_compaction_input_tokens_threshold(mut self, threshold: u32) -> Self {
-        self.auto_compaction_input_tokens_threshold = threshold;
-        self
-    }
-
-    #[allow(clippy::too_many_lines)]
     pub fn run_turn(
         &mut self,
         user_input: impl Into<String>,
         mut prompter: Option<&mut dyn PermissionPrompter>,
     ) -> Result<TurnSummary, RuntimeError> {
         self.session
-            .messages
+            .push_user_text(user_input.into())
-            .push(ConversationMessage::user_text(user_input.into()));
+            .map_err(|error| RuntimeError::new(error.to_string()))?;
 
         let mut assistant_messages = Vec::new();
         let mut tool_results = Vec::new();
         let mut iterations = 0;
-        let mut max_turn_input_tokens = 0;
 
         loop {
             iterations += 1;
@@ -251,7 +178,6 @@ where
             let events = self.api_client.stream(request)?;
             let (assistant_message, usage) = build_assistant_message(events)?;
             if let Some(usage) = usage {
-                max_turn_input_tokens = max_turn_input_tokens.max(usage.input_tokens);
                 self.usage_tracker.record(usage);
             }
             let pending_tool_uses = assistant_message
@@ -265,7 +191,9 @@ where
                 })
                 .collect::<Vec<_>>();
 
-            self.session.messages.push(assistant_message.clone());
+            self.session
+                .push_message(assistant_message.clone())
+                .map_err(|error| RuntimeError::new(error.to_string()))?;
             assistant_messages.push(assistant_message);
 
             if pending_tool_uses.is_empty() {
@@ -288,21 +216,7 @@ where
                             ConversationMessage::tool_result(
                                 tool_use_id,
                                 tool_name,
-                                format_hook_message(pre_hook_result.messages(), &deny_message),
+                                format_hook_message(&pre_hook_result, &deny_message),
-                                true,
-                            )
-                        } else {
-                            let plugin_pre_hook_result =
-                                self.run_plugin_pre_tool_use(&tool_name, &input);
-                            if plugin_pre_hook_result.is_denied() {
-                                let deny_message =
-                                    format!("PreToolUse hook denied tool `{tool_name}`");
-                                let mut messages = pre_hook_result.messages().to_vec();
-                                messages.extend(plugin_pre_hook_result.messages().iter().cloned());
-                                ConversationMessage::tool_result(
-                                    tool_use_id,
-                                    tool_name,
-                                    format_hook_message(&messages, &deny_message),
                                 true,
                             )
                         } else {
@@ -311,43 +225,19 @@ where
                                     Ok(output) => (output, false),
                                     Err(error) => (error.to_string(), true),
                                 };
-                                output =
+                            output = merge_hook_feedback(pre_hook_result.messages(), output, false);
-                                    merge_hook_feedback(pre_hook_result.messages(), output, false);
-                                output = merge_hook_feedback(
-                                    plugin_pre_hook_result.messages(),
-                                    output,
-                                    false,
-                                );
 
-                                let hook_output = output.clone();
+                            let post_hook_result = self
-                                let post_hook_result = self.hook_runner.run_post_tool_use(
+                                .hook_runner
-                                    &tool_name,
+                                .run_post_tool_use(&tool_name, &input, &output, is_error);
-                                    &input,
-                                    &hook_output,
-                                    is_error,
-                                );
-                                let plugin_post_hook_result = self.run_plugin_post_tool_use(
-                                    &tool_name,
-                                    &input,
-                                    &hook_output,
-                                    is_error,
-                                );
                             if post_hook_result.is_denied() {
                                 is_error = true;
                             }
-                                if plugin_post_hook_result.is_denied() {
-                                    is_error = true;
-                                }
                             output = merge_hook_feedback(
                                 post_hook_result.messages(),
                                 output,
                                 post_hook_result.is_denied(),
                             );
-                                output = merge_hook_feedback(
-                                    plugin_post_hook_result.messages(),
-                                    output,
-                                    plugin_post_hook_result.is_denied(),
-                                );
 
                             ConversationMessage::tool_result(
                                 tool_use_id,
@@ -357,24 +247,22 @@ where
                             )
                         }
                     }
-                    }
                     PermissionOutcome::Deny { reason } => {
                         ConversationMessage::tool_result(tool_use_id, tool_name, reason, true)
                     }
                 };
-                self.session.messages.push(result_message.clone());
+                self.session
+                    .push_message(result_message.clone())
+                    .map_err(|error| RuntimeError::new(error.to_string()))?;
                 tool_results.push(result_message);
             }
         }
 
-        let auto_compaction = self.maybe_auto_compact(max_turn_input_tokens);
-
         Ok(TurnSummary {
             assistant_messages,
             tool_results,
             iterations,
             usage: self.usage_tracker.cumulative_usage(),
-            auto_compaction,
         })
     }
 
@@ -399,81 +287,14 @@ where
     }
 
     #[must_use]
-    pub fn into_session(mut self) -> Session {
+    pub fn fork_session(&self, branch_name: Option<String>) -> Session {
-        let _ = self.shutdown_registered_plugins();
+        self.session.fork(branch_name)
-        std::mem::take(&mut self.session)
     }
 
-    pub fn shutdown_plugins(&mut self) -> Result<(), RuntimeError> {
+    #[must_use]
-        self.shutdown_registered_plugins()
+    pub fn into_session(self) -> Session {
+        self.session
     }
-
-    fn run_plugin_pre_tool_use(&self, tool_name: &str, input: &str) -> plugins::HookRunResult {
-        self.plugin_hook_runner.as_ref().map_or_else(
-            || plugins::HookRunResult::allow(Vec::new()),
-            |runner| runner.run_pre_tool_use(tool_name, input),
-        )
-    }
-
-    fn run_plugin_post_tool_use(
-        &self,
-        tool_name: &str,
-        input: &str,
-        output: &str,
-        is_error: bool,
-    ) -> plugins::HookRunResult {
-        self.plugin_hook_runner.as_ref().map_or_else(
-            || plugins::HookRunResult::allow(Vec::new()),
-            |runner| runner.run_post_tool_use(tool_name, input, output, is_error),
-        )
-    }
-
-    fn maybe_auto_compact(&mut self, turn_input_tokens: u32) -> Option<AutoCompactionEvent> {
-        if turn_input_tokens < self.auto_compaction_input_tokens_threshold {
-            return None;
-        }
-
-        let result = compact_session(
-            &self.session,
-            CompactionConfig {
-                max_estimated_tokens: usize::try_from(self.auto_compaction_input_tokens_threshold)
-                    .unwrap_or(usize::MAX),
-                ..CompactionConfig::default()
-            },
-        );
-
-        if result.removed_message_count == 0 {
-            return None;
-        }
-
-        self.session = result.compacted_session;
-        Some(AutoCompactionEvent {
-            removed_message_count: result.removed_message_count,
-        })
-    }
-}
-
-impl<C, T> Drop for ConversationRuntime<C, T> {
-    fn drop(&mut self) {
-        let _ = self.shutdown_registered_plugins();
-    }
-}
-
-#[must_use]
-pub fn auto_compaction_threshold_from_env() -> u32 {
-    parse_auto_compaction_threshold(
-        std::env::var(AUTO_COMPACTION_THRESHOLD_ENV_VAR)
-            .ok()
-            .as_deref(),
-    )
-}
-
-#[must_use]
-fn parse_auto_compaction_threshold(value: Option<&str>) -> u32 {
-    value
-        .and_then(|raw| raw.trim().parse::<u32>().ok())
-        .filter(|threshold| *threshold > 0)
-        .unwrap_or(DEFAULT_AUTO_COMPACTION_INPUT_TOKENS_THRESHOLD)
 }
 
 fn build_assistant_message(
@@ -523,11 +344,11 @@ fn flush_text_block(text: &mut String, blocks: &mut Vec<ContentBlock>) {
     }
 }
 
-fn format_hook_message(messages: &[String], fallback: &str) -> String {
+fn format_hook_message(result: &HookRunResult, fallback: &str) -> String {
-    if messages.is_empty() {
+    if result.messages().is_empty() {
         fallback.to_string()
     } else {
-        messages.join("\n")
+        result.messages().join("\n")
     }
 }
 
@@ -584,9 +405,8 @@ impl ToolExecutor for StaticToolExecutor {
 #[cfg(test)]
 mod tests {
     use super::{
-        parse_auto_compaction_threshold, ApiClient, ApiRequest, AssistantEvent,
+        ApiClient, ApiRequest, AssistantEvent, ConversationRuntime, RuntimeError,
-        AutoCompactionEvent, ConversationRuntime, RuntimeError, StaticToolExecutor,
+        StaticToolExecutor,
-        DEFAULT_AUTO_COMPACTION_INPUT_TOKENS_THRESHOLD,
     };
     use crate::compact::CompactionConfig;
     use crate::config::{RuntimeFeatureConfig, RuntimeHookConfig};
@@ -597,11 +417,7 @@ mod tests {
     use crate::prompt::{ProjectContext, SystemPromptBuilder};
     use crate::session::{ContentBlock, MessageRole, Session};
     use crate::usage::TokenUsage;
-    use plugins::{PluginManager, PluginManagerConfig};
     use std::fs;
-    #[cfg(unix)]
-    use std::os::unix::fs::PermissionsExt;
-    use std::path::Path;
     use std::path::PathBuf;
     use std::time::{SystemTime, UNIX_EPOCH};
 
@@ -665,68 +481,6 @@ mod tests {
         }
     }
 
-    fn temp_dir(label: &str) -> PathBuf {
-        let nanos = SystemTime::now()
-            .duration_since(UNIX_EPOCH)
-            .expect("time should be after epoch")
-            .as_nanos();
-        std::env::temp_dir().join(format!("runtime-plugin-{label}-{nanos}"))
-    }
-
-    fn write_lifecycle_plugin(root: &Path, name: &str) -> PathBuf {
-        fs::create_dir_all(root.join(".claude-plugin")).expect("manifest dir");
-        fs::create_dir_all(root.join("lifecycle")).expect("lifecycle dir");
-        let log_path = root.join("lifecycle.log");
-        fs::write(
-            root.join("lifecycle").join("init.sh"),
-            "#!/bin/sh\nprintf 'init\\n' >> lifecycle.log\n",
-        )
-        .expect("write init script");
-        fs::write(
-            root.join("lifecycle").join("shutdown.sh"),
-            "#!/bin/sh\nprintf 'shutdown\\n' >> lifecycle.log\n",
-        )
-        .expect("write shutdown script");
-        fs::write(
-            root.join(".claude-plugin").join("plugin.json"),
-            format!(
-                "{{\n  \"name\": \"{name}\",\n  \"version\": \"1.0.0\",\n  \"description\": \"runtime lifecycle plugin\",\n  \"lifecycle\": {{\n    \"Init\": [\"./lifecycle/init.sh\"],\n    \"Shutdown\": [\"./lifecycle/shutdown.sh\"]\n  }}\n}}"
-            ),
-        )
-        .expect("write plugin manifest");
-        log_path
-    }
-
-    fn write_hook_plugin(root: &Path, name: &str, pre_message: &str, post_message: &str) {
-        fs::create_dir_all(root.join(".claude-plugin")).expect("manifest dir");
-        fs::create_dir_all(root.join("hooks")).expect("hooks dir");
-        fs::write(
-            root.join("hooks").join("pre.sh"),
-            format!("#!/bin/sh\nprintf '%s\\n' '{pre_message}'\n"),
-        )
-        .expect("write pre hook");
-        fs::write(
-            root.join("hooks").join("post.sh"),
-            format!("#!/bin/sh\nprintf '%s\\n' '{post_message}'\n"),
-        )
-        .expect("write post hook");
-        #[cfg(unix)]
-        {
-            let exec_mode = fs::Permissions::from_mode(0o755);
-            fs::set_permissions(root.join("hooks").join("pre.sh"), exec_mode.clone())
-                .expect("chmod pre hook");
-            fs::set_permissions(root.join("hooks").join("post.sh"), exec_mode)
-                .expect("chmod post hook");
-        }
-        fs::write(
-            root.join(".claude-plugin").join("plugin.json"),
-            format!(
-                "{{\n  \"name\": \"{name}\",\n  \"version\": \"1.0.0\",\n  \"description\": \"runtime hook plugin\",\n  \"hooks\": {{\n    \"PreToolUse\": [\"./hooks/pre.sh\"],\n    \"PostToolUse\": [\"./hooks/post.sh\"]\n  }}\n}}"
-            ),
-        )
-        .expect("write plugin manifest");
-    }
-
     #[test]
     fn runs_user_to_tool_to_result_loop_end_to_end_and_tracks_usage() {
         let api_client = ScriptedApiClient { call_count: 0 };
@@ -765,7 +519,6 @@ mod tests {
         assert_eq!(summary.tool_results.len(), 1);
         assert_eq!(runtime.session().messages.len(), 4);
         assert_eq!(summary.usage.output_tokens, 10);
-        assert_eq!(summary.auto_compaction, None);
         assert!(matches!(
             runtime.session().messages[1].blocks[1],
             ContentBlock::ToolUse { .. }
@@ -955,7 +708,7 @@ mod tests {
             "post hook should preserve non-error result: {output:?}"
         );
         assert!(
-            output.contains('4'),
+            output.contains("4"),
             "tool output missing value: {output:?}"
         );
         assert!(
@@ -968,153 +721,6 @@ mod tests {
         );
     }
 
-    #[test]
-    fn initializes_and_shuts_down_plugins_with_runtime_lifecycle() {
-        let config_home = temp_dir("config");
-        let source_root = temp_dir("source");
-        let _ = write_lifecycle_plugin(&source_root, "runtime-lifecycle");
-
-        let mut manager = PluginManager::new(PluginManagerConfig::new(&config_home));
-        let install = manager
-            .install(source_root.to_str().expect("utf8 path"))
-            .expect("install should succeed");
-        let log_path = install.install_path.join("lifecycle.log");
-        let registry = manager.plugin_registry().expect("registry should load");
-
-        {
-            let runtime = ConversationRuntime::new_with_plugins(
-                Session::new(),
-                ScriptedApiClient { call_count: 0 },
-                StaticToolExecutor::new().register("add", |_input| Ok("4".to_string())),
-                PermissionPolicy::new(PermissionMode::WorkspaceWrite),
-                vec!["system".to_string()],
-                RuntimeFeatureConfig::default(),
-                registry,
-            )
-            .expect("runtime should initialize plugins");
-
-            let log = fs::read_to_string(&log_path).expect("init log should exist");
-            assert_eq!(log, "init\n");
-            drop(runtime);
-        }
-
-        let log = fs::read_to_string(&log_path).expect("shutdown log should exist");
-        assert_eq!(log, "init\nshutdown\n");
-
-        let _ = fs::remove_dir_all(config_home);
-        let _ = fs::remove_dir_all(source_root);
-    }
-
-    #[test]
-    fn executes_hooks_from_installed_plugins_during_tool_use() {
-        struct TwoCallApiClient {
-            calls: usize,
-        }
-
-        impl ApiClient for TwoCallApiClient {
-            fn stream(&mut self, request: ApiRequest) -> Result<Vec<AssistantEvent>, RuntimeError> {
-                self.calls += 1;
-                match self.calls {
-                    1 => Ok(vec![
-                        AssistantEvent::ToolUse {
-                            id: "tool-1".to_string(),
-                            name: "add".to_string(),
-                            input: r#"{"lhs":2,"rhs":2}"#.to_string(),
-                        },
-                        AssistantEvent::MessageStop,
-                    ]),
-                    2 => {
-                        assert!(request
-                            .messages
-                            .iter()
-                            .any(|message| message.role == MessageRole::Tool));
-                        Ok(vec![
-                            AssistantEvent::TextDelta("done".to_string()),
-                            AssistantEvent::MessageStop,
-                        ])
-                    }
-                    _ => Err(RuntimeError::new("unexpected extra API call")),
-                }
-            }
-        }
-
-        let config_home = temp_dir("hook-config");
-        let first_source_root = temp_dir("hook-source-a");
-        let second_source_root = temp_dir("hook-source-b");
-        write_hook_plugin(
-            &first_source_root,
-            "first",
-            "plugin pre one",
-            "plugin post one",
-        );
-        write_hook_plugin(
-            &second_source_root,
-            "second",
-            "plugin pre two",
-            "plugin post two",
-        );
-
-        let mut manager = PluginManager::new(PluginManagerConfig::new(&config_home));
-        manager
-            .install(first_source_root.to_str().expect("utf8 path"))
-            .expect("first plugin install should succeed");
-        manager
-            .install(second_source_root.to_str().expect("utf8 path"))
-            .expect("second plugin install should succeed");
-        let registry = manager.plugin_registry().expect("registry should load");
-
-        let mut runtime = ConversationRuntime::new_with_plugins(
-            Session::new(),
-            TwoCallApiClient { calls: 0 },
-            StaticToolExecutor::new().register("add", |_input| Ok("4".to_string())),
-            PermissionPolicy::new(PermissionMode::DangerFullAccess),
-            vec!["system".to_string()],
-            RuntimeFeatureConfig::default(),
-            registry,
-        )
-        .expect("runtime should load plugin hooks");
-
-        let summary = runtime
-            .run_turn("use add", None)
-            .expect("tool loop succeeds");
-
-        assert_eq!(summary.tool_results.len(), 1);
-        let ContentBlock::ToolResult {
-            is_error, output, ..
-        } = &summary.tool_results[0].blocks[0]
-        else {
-            panic!("expected tool result block");
-        };
-        assert!(
-            !*is_error,
-            "plugin hooks should not force an error: {output:?}"
-        );
-        assert!(
-            output.contains('4'),
-            "tool output missing value: {output:?}"
-        );
-        assert!(
-            output.contains("plugin pre one"),
-            "tool output missing first pre hook feedback: {output:?}"
-        );
-        assert!(
-            output.contains("plugin pre two"),
-            "tool output missing second pre hook feedback: {output:?}"
-        );
-        assert!(
-            output.contains("plugin post one"),
-            "tool output missing first post hook feedback: {output:?}"
-        );
-        assert!(
-            output.contains("plugin post two"),
-            "tool output missing second post hook feedback: {output:?}"
-        );
-
-        let _ = fs::remove_dir_all(config_home);
-        let _ = fs::remove_dir_all(first_source_root);
-        let _ = fs::remove_dir_all(second_source_root);
-    }
-
     #[test]
     fn reconstructs_usage_tracker_from_restored_session() {
         struct SimpleApi;
@@ -1192,6 +798,86 @@ mod tests {
             result.compacted_session.messages[0].role,
             MessageRole::System
         );
+        assert_eq!(
+            result.compacted_session.session_id,
+            runtime.session().session_id
+        );
+        assert!(result.compacted_session.compaction.is_some());
+    }
+
+    #[test]
+    fn persists_conversation_turn_messages_to_jsonl_session() {
+        struct SimpleApi;
+        impl ApiClient for SimpleApi {
+            fn stream(
+                &mut self,
+                _request: ApiRequest,
+            ) -> Result<Vec<AssistantEvent>, RuntimeError> {
+                Ok(vec![
+                    AssistantEvent::TextDelta("done".to_string()),
+                    AssistantEvent::MessageStop,
+                ])
+            }
+        }
+
+        let path = temp_session_path("persisted-turn");
+        let session = Session::new().with_persistence_path(path.clone());
+        let mut runtime = ConversationRuntime::new(
+            session,
+            SimpleApi,
+            StaticToolExecutor::new(),
+            PermissionPolicy::new(PermissionMode::DangerFullAccess),
+            vec!["system".to_string()],
+        );
+
+        runtime
+            .run_turn("persist this turn", None)
+            .expect("turn should succeed");
+
+        let restored = Session::load_from_path(&path).expect("persisted session should reload");
+        fs::remove_file(&path).expect("temp session file should be removable");
+
+        assert_eq!(restored.messages.len(), 2);
+        assert_eq!(restored.messages[0].role, MessageRole::User);
+        assert_eq!(restored.messages[1].role, MessageRole::Assistant);
+        assert_eq!(restored.session_id, runtime.session().session_id);
+    }
+
+    #[test]
+    fn forks_runtime_session_without_mutating_original() {
+        let mut session = Session::new();
+        session
+            .push_user_text("branch me")
+            .expect("message should append");
+
+        let runtime = ConversationRuntime::new(
+            session.clone(),
+            ScriptedApiClient { call_count: 0 },
+            StaticToolExecutor::new(),
+            PermissionPolicy::new(PermissionMode::DangerFullAccess),
+            vec!["system".to_string()],
+        );
+
+        let forked = runtime.fork_session(Some("alt-path".to_string()));
+
+        assert_eq!(forked.messages, session.messages);
+        assert_ne!(forked.session_id, session.session_id);
+        assert_eq!(
+            forked
+                .fork
+                .as_ref()
+                .map(|fork| (fork.parent_session_id.as_str(), fork.branch_name.as_deref())),
+            Some((session.session_id.as_str(), Some("alt-path")))
+        );
+        assert!(runtime.session().fork.is_none());
+    }
+
+    fn temp_session_path(label: &str) -> PathBuf {
+        let nanos = SystemTime::now()
+            .duration_since(UNIX_EPOCH)
+            .expect("system time should be after epoch")
+            .as_nanos();
+        std::env::temp_dir().join(format!("runtime-conversation-{label}-{nanos}.json"))
     }
 
     #[cfg(windows)]
@@ -1203,177 +889,4 @@ mod tests {
     fn shell_snippet(script: &str) -> String {
         script.to_string()
     }
-
-    #[test]
-    fn auto_compacts_when_turn_input_threshold_is_crossed() {
-        struct SimpleApi;
-        impl ApiClient for SimpleApi {
-            fn stream(
-                &mut self,
-                _request: ApiRequest,
-            ) -> Result<Vec<AssistantEvent>, RuntimeError> {
-                Ok(vec![
-                    AssistantEvent::TextDelta("done".to_string()),
-                    AssistantEvent::Usage(TokenUsage {
-                        input_tokens: 120_000,
-                        output_tokens: 4,
-                        cache_creation_input_tokens: 0,
-                        cache_read_input_tokens: 0,
-                    }),
-                    AssistantEvent::MessageStop,
-                ])
-            }
-        }
-
-        let session = Session {
-            version: 1,
-            messages: vec![
-                crate::session::ConversationMessage::user_text("one ".repeat(30_000)),
-                crate::session::ConversationMessage::assistant(vec![ContentBlock::Text {
-                    text: "two ".repeat(30_000),
-                }]),
-                crate::session::ConversationMessage::user_text("three ".repeat(30_000)),
-                crate::session::ConversationMessage::assistant(vec![ContentBlock::Text {
-                    text: "four ".repeat(30_000),
-                }]),
-            ],
-        };
-
-        let mut runtime = ConversationRuntime::new(
-            session,
-            SimpleApi,
-            StaticToolExecutor::new(),
-            PermissionPolicy::new(PermissionMode::DangerFullAccess),
-            vec!["system".to_string()],
-        )
-        .with_auto_compaction_input_tokens_threshold(100_000);
-
-        let summary = runtime
-            .run_turn("trigger", None)
-            .expect("turn should succeed");
-
-        assert_eq!(
-            summary.auto_compaction,
-            Some(AutoCompactionEvent {
-                removed_message_count: 2,
-            })
-        );
-        assert_eq!(runtime.session().messages[0].role, MessageRole::System);
-    }
-
-    #[test]
-    fn auto_compaction_does_not_repeat_after_context_is_already_compacted() {
-        struct SequentialUsageApi {
-            call_count: usize,
-        }
-
-        impl ApiClient for SequentialUsageApi {
-            fn stream(
-                &mut self,
-                _request: ApiRequest,
-            ) -> Result<Vec<AssistantEvent>, RuntimeError> {
-                self.call_count += 1;
-                let input_tokens = if self.call_count == 1 { 120_000 } else { 64 };
-                Ok(vec![
-                    AssistantEvent::TextDelta("done".to_string()),
-                    AssistantEvent::Usage(TokenUsage {
-                        input_tokens,
-                        output_tokens: 4,
-                        cache_creation_input_tokens: 0,
-                        cache_read_input_tokens: 0,
-                    }),
-                    AssistantEvent::MessageStop,
-                ])
-            }
-        }
-
-        let session = Session {
-            version: 1,
-            messages: vec![
-                crate::session::ConversationMessage::user_text("one ".repeat(30_000)),
-                crate::session::ConversationMessage::assistant(vec![ContentBlock::Text {
-                    text: "two ".repeat(30_000),
-                }]),
-                crate::session::ConversationMessage::user_text("three ".repeat(30_000)),
-                crate::session::ConversationMessage::assistant(vec![ContentBlock::Text {
-                    text: "four ".repeat(30_000),
-                }]),
-            ],
-        };
-
-        let mut runtime = ConversationRuntime::new(
-            session,
-            SequentialUsageApi { call_count: 0 },
-            StaticToolExecutor::new(),
-            PermissionPolicy::new(PermissionMode::DangerFullAccess),
-            vec!["system".to_string()],
-        )
-        .with_auto_compaction_input_tokens_threshold(100_000);
-
-        let first = runtime
-            .run_turn("trigger", None)
-            .expect("first turn should succeed");
-        assert_eq!(
-            first.auto_compaction,
-            Some(AutoCompactionEvent {
-                removed_message_count: 2,
-            })
-        );
-
-        let second = runtime
-            .run_turn("continue", None)
-            .expect("second turn should succeed");
-        assert_eq!(second.auto_compaction, None);
-        assert_eq!(runtime.session().messages[0].role, MessageRole::System);
-    }
-
-    #[test]
-    fn skips_auto_compaction_below_threshold() {
-        struct SimpleApi;
-        impl ApiClient for SimpleApi {
-            fn stream(
-                &mut self,
-                _request: ApiRequest,
-            ) -> Result<Vec<AssistantEvent>, RuntimeError> {
-                Ok(vec![
-                    AssistantEvent::TextDelta("done".to_string()),
-                    AssistantEvent::Usage(TokenUsage {
-                        input_tokens: 99_999,
-                        output_tokens: 4,
-                        cache_creation_input_tokens: 0,
-                        cache_read_input_tokens: 0,
-                    }),
-                    AssistantEvent::MessageStop,
-                ])
-            }
-        }
-
-        let mut runtime = ConversationRuntime::new(
-            Session::new(),
-            SimpleApi,
-            StaticToolExecutor::new(),
-            PermissionPolicy::new(PermissionMode::DangerFullAccess),
-            vec!["system".to_string()],
-        )
-        .with_auto_compaction_input_tokens_threshold(100_000);
-
-        let summary = runtime
-            .run_turn("trigger", None)
-            .expect("turn should succeed");
-        assert_eq!(summary.auto_compaction, None);
-        assert_eq!(runtime.session().messages.len(), 2);
-    }
-
-    #[test]
-    fn auto_compaction_threshold_defaults_and_parses_values() {
-        assert_eq!(
-            parse_auto_compaction_threshold(None),
-            DEFAULT_AUTO_COMPACTION_INPUT_TOKENS_THRESHOLD
-        );
-        assert_eq!(parse_auto_compaction_threshold(Some("4321")), 4321);
-        assert_eq!(
-            parse_auto_compaction_threshold(Some("not-a-number")),
-            DEFAULT_AUTO_COMPACTION_INPUT_TOKENS_THRESHOLD
-        );
-    }
 }

rust/crates/runtime/src/hooks.rs

@@ -1,5 +1,4 @@
 use std::ffi::OsStr;
-use std::path::Path;
 use std::process::Command;
 
 use serde_json::json;
@@ -150,7 +149,6 @@ impl HookRunner {
         HookRunResult::allow(messages)
     }
 
-    #[allow(clippy::too_many_arguments, clippy::unused_self)]
     fn run_command(
         &self,
         command: &str,
@@ -239,11 +237,7 @@ fn shell_command(command: &str) -> CommandWithStdin {
     };
 
     #[cfg(not(windows))]
-    let command_builder = if Path::new(command).exists() {
+    let command_builder = {
-        let mut command_builder = Command::new("sh");
-        command_builder.arg(command);
-        CommandWithStdin::new(command_builder)
-    } else {
         let mut command_builder = Command::new("sh");
         command_builder.arg("-lc").arg(command);
         CommandWithStdin::new(command_builder)

rust/crates/runtime/src/lib.rs

@@ -28,11 +28,11 @@ pub use config::{
     McpConfigCollection, McpOAuthConfig, McpRemoteServerConfig, McpSdkServerConfig,
     McpServerConfig, McpStdioServerConfig, McpTransport, McpWebSocketServerConfig, OAuthConfig,
     ResolvedPermissionMode, RuntimeConfig, RuntimeFeatureConfig, RuntimeHookConfig,
-    RuntimePluginConfig, ScopedMcpServerConfig, CLAUDE_CODE_SETTINGS_SCHEMA_NAME,
+    ScopedMcpServerConfig, CLAUDE_CODE_SETTINGS_SCHEMA_NAME,
 };
 pub use conversation::{
-    auto_compaction_threshold_from_env, ApiClient, ApiRequest, AssistantEvent, AutoCompactionEvent,
+    ApiClient, ApiRequest, AssistantEvent, ConversationRuntime, RuntimeError, StaticToolExecutor,
-    ConversationRuntime, RuntimeError, StaticToolExecutor, ToolError, ToolExecutor, TurnSummary,
+    ToolError, ToolExecutor, TurnSummary,
 };
 pub use file_ops::{
     edit_file, glob_search, grep_search, read_file, write_file, EditFileOutput, GlobSearchOutput,
@@ -76,7 +76,10 @@ pub use remote::{
     RemoteSessionContext, UpstreamProxyBootstrap, UpstreamProxyState, DEFAULT_REMOTE_BASE_URL,
     DEFAULT_SESSION_TOKEN_PATH, DEFAULT_SYSTEM_CA_BUNDLE, NO_PROXY_HOSTS, UPSTREAM_PROXY_ENV_KEYS,
 };
-pub use session::{ContentBlock, ConversationMessage, MessageRole, Session, SessionError};
+pub use session::{
+    ContentBlock, ConversationMessage, MessageRole, Session, SessionCompaction, SessionError,
+    SessionFork,
+};
 pub use usage::{
     format_usd, pricing_for_model, ModelPricing, TokenUsage, UsageCostEstimate, UsageTracker,
 };

rust/crates/runtime/src/prompt.rs

@@ -421,7 +421,7 @@ fn render_config_section(config: &RuntimeConfig) -> String {
     let mut lines = vec!["# Runtime config".to_string()];
     if config.loaded_entries().is_empty() {
         lines.extend(prepend_bullets(vec![
-            "No Claw Code settings files loaded.".to_string()
+            "No Claude Code settings files loaded.".to_string(),
         ]));
         return lines.join("\n");
     }

rust/crates/runtime/src/session.rs

@@ -1,11 +1,19 @@
 use std::collections::BTreeMap;
 use std::fmt::{Display, Formatter};
-use std::fs;
+use std::fs::{self, OpenOptions};
-use std::path::Path;
+use std::io::Write;
+use std::path::{Path, PathBuf};
+use std::sync::atomic::{AtomicU64, Ordering};
+use std::time::{SystemTime, UNIX_EPOCH};
 
 use crate::json::{JsonError, JsonValue};
 use crate::usage::TokenUsage;
 
+const SESSION_VERSION: u32 = 1;
+const ROTATE_AFTER_BYTES: u64 = 256 * 1024;
+const MAX_ROTATED_FILES: usize = 3;
+static SESSION_ID_COUNTER: AtomicU64 = AtomicU64::new(0);
+
 #[derive(Debug, Clone, Copy, PartialEq, Eq)]
 pub enum MessageRole {
     System,
@@ -40,11 +48,49 @@ pub struct ConversationMessage {
 }
 
 #[derive(Debug, Clone, PartialEq, Eq)]
+pub struct SessionCompaction {
+    pub count: u32,
+    pub removed_message_count: usize,
+    pub summary: String,
+}
+
+#[derive(Debug, Clone, PartialEq, Eq)]
+pub struct SessionFork {
+    pub parent_session_id: String,
+    pub branch_name: Option<String>,
+}
+
+#[derive(Debug, Clone, PartialEq, Eq)]
+struct SessionPersistence {
+    path: PathBuf,
+}
+
+#[derive(Debug, Clone)]
 pub struct Session {
     pub version: u32,
+    pub session_id: String,
+    pub created_at_ms: u64,
+    pub updated_at_ms: u64,
     pub messages: Vec<ConversationMessage>,
+    pub compaction: Option<SessionCompaction>,
+    pub fork: Option<SessionFork>,
+    persistence: Option<SessionPersistence>,
 }
 
+impl PartialEq for Session {
+    fn eq(&self, other: &Self) -> bool {
+        self.version == other.version
+            && self.session_id == other.session_id
+            && self.created_at_ms == other.created_at_ms
+            && self.updated_at_ms == other.updated_at_ms
+            && self.messages == other.messages
+            && self.compaction == other.compaction
+            && self.fork == other.fork
+    }
+}
+
+impl Eq for Session {}
+
 #[derive(Debug)]
 pub enum SessionError {
     Io(std::io::Error),
@@ -79,20 +125,84 @@ impl From<JsonError> for SessionError {
 impl Session {
     #[must_use]
     pub fn new() -> Self {
+        let now = current_time_millis();
         Self {
-            version: 1,
+            version: SESSION_VERSION,
+            session_id: generate_session_id(),
+            created_at_ms: now,
+            updated_at_ms: now,
             messages: Vec::new(),
+            compaction: None,
+            fork: None,
+            persistence: None,
         }
     }
 
+    #[must_use]
+    pub fn with_persistence_path(mut self, path: impl Into<PathBuf>) -> Self {
+        self.persistence = Some(SessionPersistence { path: path.into() });
+        self
+    }
+
+    #[must_use]
+    pub fn persistence_path(&self) -> Option<&Path> {
+        self.persistence.as_ref().map(|value| value.path.as_path())
+    }
+
     pub fn save_to_path(&self, path: impl AsRef<Path>) -> Result<(), SessionError> {
-        fs::write(path, self.to_json().render())?;
+        let path = path.as_ref();
+        rotate_session_file_if_needed(path)?;
+        write_atomic(path, &self.render_jsonl_snapshot())?;
+        cleanup_rotated_logs(path)?;
         Ok(())
     }
 
     pub fn load_from_path(path: impl AsRef<Path>) -> Result<Self, SessionError> {
+        let path = path.as_ref();
         let contents = fs::read_to_string(path)?;
-        Self::from_json(&JsonValue::parse(&contents)?)
+        let session = match JsonValue::parse(&contents) {
+            Ok(value) => Self::from_json(&value)?,
+            Err(_) => Self::from_jsonl(&contents)?,
+        };
+        Ok(session.with_persistence_path(path.to_path_buf()))
+    }
+
+    pub fn push_message(&mut self, message: ConversationMessage) -> Result<(), SessionError> {
+        self.touch();
+        self.messages.push(message.clone());
+        self.append_persisted_message(&message)
+    }
+
+    pub fn push_user_text(&mut self, text: impl Into<String>) -> Result<(), SessionError> {
+        self.push_message(ConversationMessage::user_text(text))
+    }
+
+    pub fn record_compaction(&mut self, summary: impl Into<String>, removed_message_count: usize) {
+        self.touch();
+        let count = self.compaction.as_ref().map_or(1, |value| value.count + 1);
+        self.compaction = Some(SessionCompaction {
+            count,
+            removed_message_count,
+            summary: summary.into(),
+        });
+    }
+
+    #[must_use]
+    pub fn fork(&self, branch_name: Option<String>) -> Self {
+        let now = current_time_millis();
+        Self {
+            version: self.version,
+            session_id: generate_session_id(),
+            created_at_ms: now,
+            updated_at_ms: now,
+            messages: self.messages.clone(),
+            compaction: self.compaction.clone(),
+            fork: Some(SessionFork {
+                parent_session_id: self.session_id.clone(),
+                branch_name: normalize_optional_string(branch_name),
+            }),
+            persistence: None,
+        }
     }
 
     #[must_use]
@@ -102,6 +212,18 @@ impl Session {
             "version".to_string(),
             JsonValue::Number(i64::from(self.version)),
         );
+        object.insert(
+            "session_id".to_string(),
+            JsonValue::String(self.session_id.clone()),
+        );
+        object.insert(
+            "created_at_ms".to_string(),
+            JsonValue::Number(i64_from_u64(self.created_at_ms, "created_at_ms")),
+        );
+        object.insert(
+            "updated_at_ms".to_string(),
+            JsonValue::Number(i64_from_u64(self.updated_at_ms, "updated_at_ms")),
+        );
         object.insert(
             "messages".to_string(),
             JsonValue::Array(
@@ -111,6 +233,12 @@ impl Session {
                     .collect(),
             ),
         );
+        if let Some(compaction) = &self.compaction {
+            object.insert("compaction".to_string(), compaction.to_json());
+        }
+        if let Some(fork) = &self.fork {
+            object.insert("fork".to_string(), fork.to_json());
+        }
         JsonValue::Object(object)
     }
 
@@ -131,7 +259,179 @@ impl Session {
             .iter()
             .map(ConversationMessage::from_json)
             .collect::<Result<Vec<_>, _>>()?;
-        Ok(Self { version, messages })
+        let now = current_time_millis();
+        let session_id = object
+            .get("session_id")
+            .and_then(JsonValue::as_str)
+            .map(ToOwned::to_owned)
+            .unwrap_or_else(generate_session_id);
+        let created_at_ms = object
+            .get("created_at_ms")
+            .map(|value| required_u64_from_value(value, "created_at_ms"))
+            .transpose()?
+            .unwrap_or(now);
+        let updated_at_ms = object
+            .get("updated_at_ms")
+            .map(|value| required_u64_from_value(value, "updated_at_ms"))
+            .transpose()?
+            .unwrap_or(created_at_ms);
+        let compaction = object
+            .get("compaction")
+            .map(SessionCompaction::from_json)
+            .transpose()?;
+        let fork = object.get("fork").map(SessionFork::from_json).transpose()?;
+        Ok(Self {
+            version,
+            session_id,
+            created_at_ms,
+            updated_at_ms,
+            messages,
+            compaction,
+            fork,
+            persistence: None,
+        })
+    }
+
+    fn from_jsonl(contents: &str) -> Result<Self, SessionError> {
+        let mut version = SESSION_VERSION;
+        let mut session_id = None;
+        let mut created_at_ms = None;
+        let mut updated_at_ms = None;
+        let mut messages = Vec::new();
+        let mut compaction = None;
+        let mut fork = None;
+
+        for (line_number, raw_line) in contents.lines().enumerate() {
+            let line = raw_line.trim();
+            if line.is_empty() {
+                continue;
+            }
+            let value = JsonValue::parse(line).map_err(|error| {
+                SessionError::Format(format!(
+                    "invalid JSONL record at line {}: {}",
+                    line_number + 1,
+                    error
+                ))
+            })?;
+            let object = value.as_object().ok_or_else(|| {
+                SessionError::Format(format!(
+                    "JSONL record at line {} must be an object",
+                    line_number + 1
+                ))
+            })?;
+            match object
+                .get("type")
+                .and_then(JsonValue::as_str)
+                .ok_or_else(|| {
+                    SessionError::Format(format!(
+                        "JSONL record at line {} missing type",
+                        line_number + 1
+                    ))
+                })? {
+                "session_meta" => {
+                    version = required_u32(object, "version")?;
+                    session_id = Some(required_string(object, "session_id")?);
+                    created_at_ms = Some(required_u64(object, "created_at_ms")?);
+                    updated_at_ms = Some(required_u64(object, "updated_at_ms")?);
+                    fork = object.get("fork").map(SessionFork::from_json).transpose()?;
+                }
+                "message" => {
+                    let message_value = object.get("message").ok_or_else(|| {
+                        SessionError::Format(format!(
+                            "JSONL record at line {} missing message",
+                            line_number + 1
+                        ))
+                    })?;
+                    messages.push(ConversationMessage::from_json(message_value)?);
+                }
+                "compaction" => {
+                    compaction = Some(SessionCompaction::from_json(&JsonValue::Object(
+                        object.clone(),
+                    ))?);
+                }
+                other => {
+                    return Err(SessionError::Format(format!(
+                        "unsupported JSONL record type at line {}: {other}",
+                        line_number + 1
+                    )))
+                }
+            }
+        }
+
+        let now = current_time_millis();
+        Ok(Self {
+            version,
+            session_id: session_id.unwrap_or_else(generate_session_id),
+            created_at_ms: created_at_ms.unwrap_or(now),
+            updated_at_ms: updated_at_ms.unwrap_or(created_at_ms.unwrap_or(now)),
+            messages,
+            compaction,
+            fork,
+            persistence: None,
+        })
+    }
+
+    fn render_jsonl_snapshot(&self) -> String {
+        let mut lines = vec![self.meta_record().render()];
+        if let Some(compaction) = &self.compaction {
+            lines.push(compaction.to_jsonl_record().render());
+        }
+        lines.extend(
+            self.messages
+                .iter()
+                .map(|message| message_record(message).render()),
+        );
+        let mut rendered = lines.join("\n");
+        rendered.push('\n');
+        rendered
+    }
+
+    fn append_persisted_message(&self, message: &ConversationMessage) -> Result<(), SessionError> {
+        let Some(path) = self.persistence_path() else {
+            return Ok(());
+        };
+
+        let needs_bootstrap = !path.exists() || fs::metadata(path)?.len() == 0;
+        if needs_bootstrap {
+            self.save_to_path(path)?;
+            return Ok(());
+        }
+
+        let mut file = OpenOptions::new().append(true).open(path)?;
+        writeln!(file, "{}", message_record(message).render())?;
+        Ok(())
+    }
+
+    fn meta_record(&self) -> JsonValue {
+        let mut object = BTreeMap::new();
+        object.insert(
+            "type".to_string(),
+            JsonValue::String("session_meta".to_string()),
+        );
+        object.insert(
+            "version".to_string(),
+            JsonValue::Number(i64::from(self.version)),
+        );
+        object.insert(
+            "session_id".to_string(),
+            JsonValue::String(self.session_id.clone()),
+        );
+        object.insert(
+            "created_at_ms".to_string(),
+            JsonValue::Number(i64_from_u64(self.created_at_ms, "created_at_ms")),
+        );
+        object.insert(
+            "updated_at_ms".to_string(),
+            JsonValue::Number(i64_from_u64(self.updated_at_ms, "updated_at_ms")),
+        );
+        if let Some(fork) = &self.fork {
+            object.insert("fork".to_string(), fork.to_json());
+        }
+        JsonValue::Object(object)
+    }
+
+    fn touch(&mut self) {
+        self.updated_at_ms = current_time_millis();
     }
 }
 
@@ -324,6 +624,92 @@ impl ContentBlock {
     }
 }
 
+impl SessionCompaction {
+    #[must_use]
+    pub fn to_json(&self) -> JsonValue {
+        let mut object = BTreeMap::new();
+        object.insert(
+            "count".to_string(),
+            JsonValue::Number(i64::from(self.count)),
+        );
+        object.insert(
+            "removed_message_count".to_string(),
+            JsonValue::Number(i64_from_usize(
+                self.removed_message_count,
+                "removed_message_count",
+            )),
+        );
+        object.insert(
+            "summary".to_string(),
+            JsonValue::String(self.summary.clone()),
+        );
+        JsonValue::Object(object)
+    }
+
+    #[must_use]
+    pub fn to_jsonl_record(&self) -> JsonValue {
+        let mut object = self
+            .to_json()
+            .as_object()
+            .cloned()
+            .expect("compaction should render to object");
+        object.insert(
+            "type".to_string(),
+            JsonValue::String("compaction".to_string()),
+        );
+        JsonValue::Object(object)
+    }
+
+    fn from_json(value: &JsonValue) -> Result<Self, SessionError> {
+        let object = value
+            .as_object()
+            .ok_or_else(|| SessionError::Format("compaction must be an object".to_string()))?;
+        Ok(Self {
+            count: required_u32(object, "count")?,
+            removed_message_count: required_usize(object, "removed_message_count")?,
+            summary: required_string(object, "summary")?,
+        })
+    }
+}
+
+impl SessionFork {
+    #[must_use]
+    pub fn to_json(&self) -> JsonValue {
+        let mut object = BTreeMap::new();
+        object.insert(
+            "parent_session_id".to_string(),
+            JsonValue::String(self.parent_session_id.clone()),
+        );
+        if let Some(branch_name) = &self.branch_name {
+            object.insert(
+                "branch_name".to_string(),
+                JsonValue::String(branch_name.clone()),
+            );
+        }
+        JsonValue::Object(object)
+    }
+
+    fn from_json(value: &JsonValue) -> Result<Self, SessionError> {
+        let object = value
+            .as_object()
+            .ok_or_else(|| SessionError::Format("fork metadata must be an object".to_string()))?;
+        Ok(Self {
+            parent_session_id: required_string(object, "parent_session_id")?,
+            branch_name: object
+                .get("branch_name")
+                .and_then(JsonValue::as_str)
+                .map(ToOwned::to_owned),
+        })
+    }
+}
+
+fn message_record(message: &ConversationMessage) -> JsonValue {
+    let mut object = BTreeMap::new();
+    object.insert("type".to_string(), JsonValue::String("message".to_string()));
+    object.insert("message".to_string(), message.to_json());
+    JsonValue::Object(object)
+}
+
 fn usage_to_json(usage: TokenUsage) -> JsonValue {
     let mut object = BTreeMap::new();
     object.insert(
@@ -376,22 +762,155 @@ fn required_u32(object: &BTreeMap<String, JsonValue>, key: &str) -> Result<u32,
     u32::try_from(value).map_err(|_| SessionError::Format(format!("{key} out of range")))
 }
 
+fn required_u64(object: &BTreeMap<String, JsonValue>, key: &str) -> Result<u64, SessionError> {
+    let value = object
+        .get(key)
+        .ok_or_else(|| SessionError::Format(format!("missing {key}")))?;
+    required_u64_from_value(value, key)
+}
+
+fn required_u64_from_value(value: &JsonValue, key: &str) -> Result<u64, SessionError> {
+    let value = value
+        .as_i64()
+        .ok_or_else(|| SessionError::Format(format!("missing {key}")))?;
+    u64::try_from(value).map_err(|_| SessionError::Format(format!("{key} out of range")))
+}
+
+fn required_usize(object: &BTreeMap<String, JsonValue>, key: &str) -> Result<usize, SessionError> {
+    let value = object
+        .get(key)
+        .and_then(JsonValue::as_i64)
+        .ok_or_else(|| SessionError::Format(format!("missing {key}")))?;
+    usize::try_from(value).map_err(|_| SessionError::Format(format!("{key} out of range")))
+}
+
+fn i64_from_u64(value: u64, key: &str) -> i64 {
+    i64::try_from(value).unwrap_or_else(|_| panic!("{key} out of range for JSON number"))
+}
+
+fn i64_from_usize(value: usize, key: &str) -> i64 {
+    i64::try_from(value).unwrap_or_else(|_| panic!("{key} out of range for JSON number"))
+}
+
+fn normalize_optional_string(value: Option<String>) -> Option<String> {
+    value.and_then(|value| {
+        let trimmed = value.trim();
+        if trimmed.is_empty() {
+            None
+        } else {
+            Some(trimmed.to_string())
+        }
+    })
+}
+
+fn current_time_millis() -> u64 {
+    SystemTime::now()
+        .duration_since(UNIX_EPOCH)
+        .map(|duration| duration.as_millis() as u64)
+        .unwrap_or_default()
+}
+
+fn generate_session_id() -> String {
+    let millis = current_time_millis();
+    let counter = SESSION_ID_COUNTER.fetch_add(1, Ordering::Relaxed);
+    format!("session-{millis}-{counter}")
+}
+
+fn write_atomic(path: &Path, contents: &str) -> Result<(), SessionError> {
+    if let Some(parent) = path.parent() {
+        fs::create_dir_all(parent)?;
+    }
+    let temp_path = temporary_path_for(path);
+    fs::write(&temp_path, contents)?;
+    fs::rename(temp_path, path)?;
+    Ok(())
+}
+
+fn temporary_path_for(path: &Path) -> PathBuf {
+    let file_name = path
+        .file_name()
+        .and_then(|value| value.to_str())
+        .unwrap_or("session");
+    path.with_file_name(format!(
+        "{file_name}.tmp-{}-{}",
+        current_time_millis(),
+        SESSION_ID_COUNTER.fetch_add(1, Ordering::Relaxed)
+    ))
+}
+
+fn rotate_session_file_if_needed(path: &Path) -> Result<(), SessionError> {
+    let Ok(metadata) = fs::metadata(path) else {
+        return Ok(());
+    };
+    if metadata.len() < ROTATE_AFTER_BYTES {
+        return Ok(());
+    }
+    let rotated_path = rotated_log_path(path);
+    fs::rename(path, rotated_path)?;
+    Ok(())
+}
+
+fn rotated_log_path(path: &Path) -> PathBuf {
+    let stem = path
+        .file_stem()
+        .and_then(|value| value.to_str())
+        .unwrap_or("session");
+    path.with_file_name(format!("{stem}.rot-{}.jsonl", current_time_millis()))
+}
+
+fn cleanup_rotated_logs(path: &Path) -> Result<(), SessionError> {
+    let Some(parent) = path.parent() else {
+        return Ok(());
+    };
+    let stem = path
+        .file_stem()
+        .and_then(|value| value.to_str())
+        .unwrap_or("session");
+    let prefix = format!("{stem}.rot-");
+    let mut rotated_paths = fs::read_dir(parent)?
+        .filter_map(Result::ok)
+        .map(|entry| entry.path())
+        .filter(|entry_path| {
+            entry_path
+                .file_name()
+                .and_then(|value| value.to_str())
+                .is_some_and(|name| name.starts_with(&prefix) && name.ends_with(".jsonl"))
+        })
+        .collect::<Vec<_>>();
+
+    rotated_paths.sort_by_key(|entry_path| {
+        fs::metadata(entry_path)
+            .and_then(|metadata| metadata.modified())
+            .unwrap_or(UNIX_EPOCH)
+    });
+
+    let remove_count = rotated_paths.len().saturating_sub(MAX_ROTATED_FILES);
+    for stale_path in rotated_paths.into_iter().take(remove_count) {
+        fs::remove_file(stale_path)?;
+    }
+    Ok(())
+}
+
 #[cfg(test)]
 mod tests {
-    use super::{ContentBlock, ConversationMessage, MessageRole, Session};
+    use super::{
+        cleanup_rotated_logs, rotate_session_file_if_needed, ContentBlock, ConversationMessage,
+        MessageRole, Session, SessionFork,
+    };
+    use crate::json::JsonValue;
     use crate::usage::TokenUsage;
     use std::fs;
+    use std::path::PathBuf;
     use std::time::{SystemTime, UNIX_EPOCH};
 
     #[test]
-    fn persists_and_restores_session_json() {
+    fn persists_and_restores_session_jsonl() {
         let mut session = Session::new();
         session
-            .messages
+            .push_user_text("hello")
-            .push(ConversationMessage::user_text("hello"));
+            .expect("user message should append");
         session
-            .messages
+            .push_message(ConversationMessage::assistant_with_usage(
-            .push(ConversationMessage::assistant_with_usage(
                 vec![
                     ContentBlock::Text {
                         text: "thinking".to_string(),
@@ -408,16 +927,15 @@ mod tests {
                     cache_creation_input_tokens: 1,
                     cache_read_input_tokens: 2,
                 }),
-            ));
+            ))
-        session.messages.push(ConversationMessage::tool_result(
+            .expect("assistant message should append");
+        session
+            .push_message(ConversationMessage::tool_result(
                 "tool-1", "bash", "hi", false,
-        ));
+            ))
+            .expect("tool result should append");
 
-        let nanos = SystemTime::now()
+        let path = temp_session_path("jsonl");
-            .duration_since(UNIX_EPOCH)
-            .expect("system time should be after epoch")
-            .as_nanos();
-        let path = std::env::temp_dir().join(format!("runtime-session-{nanos}.json"));
         session.save_to_path(&path).expect("session should save");
         let restored = Session::load_from_path(&path).expect("session should load");
         fs::remove_file(&path).expect("temp file should be removable");
@@ -428,5 +946,157 @@ mod tests {
             restored.messages[1].usage.expect("usage").total_tokens(),
             17
         );
+        assert_eq!(restored.session_id, session.session_id);
+    }
+
+    #[test]
+    fn loads_legacy_session_json_object() {
+        let path = temp_session_path("legacy");
+        let legacy = JsonValue::Object(
+            [
+                ("version".to_string(), JsonValue::Number(1)),
+                (
+                    "messages".to_string(),
+                    JsonValue::Array(vec![ConversationMessage::user_text("legacy").to_json()]),
+                ),
+            ]
+            .into_iter()
+            .collect(),
+        );
+        fs::write(&path, legacy.render()).expect("legacy file should write");
+
+        let restored = Session::load_from_path(&path).expect("legacy session should load");
+        fs::remove_file(&path).expect("temp file should be removable");
+
+        assert_eq!(restored.messages.len(), 1);
+        assert_eq!(
+            restored.messages[0],
+            ConversationMessage::user_text("legacy")
+        );
+        assert!(!restored.session_id.is_empty());
+    }
+
+    #[test]
+    fn appends_messages_to_persisted_jsonl_session() {
+        let path = temp_session_path("append");
+        let mut session = Session::new().with_persistence_path(path.clone());
+        session
+            .save_to_path(&path)
+            .expect("initial save should succeed");
+        session
+            .push_user_text("hi")
+            .expect("user append should succeed");
+        session
+            .push_message(ConversationMessage::assistant(vec![ContentBlock::Text {
+                text: "hello".to_string(),
+            }]))
+            .expect("assistant append should succeed");
+
+        let restored = Session::load_from_path(&path).expect("session should replay from jsonl");
+        fs::remove_file(&path).expect("temp file should be removable");
+
+        assert_eq!(restored.messages.len(), 2);
+        assert_eq!(restored.messages[0], ConversationMessage::user_text("hi"));
+    }
+
+    #[test]
+    fn persists_compaction_metadata() {
+        let path = temp_session_path("compaction");
+        let mut session = Session::new();
+        session
+            .push_user_text("before")
+            .expect("message should append");
+        session.record_compaction("summarized earlier work", 4);
+        session.save_to_path(&path).expect("session should save");
+
+        let restored = Session::load_from_path(&path).expect("session should load");
+        fs::remove_file(&path).expect("temp file should be removable");
+
+        let compaction = restored.compaction.expect("compaction metadata");
+        assert_eq!(compaction.count, 1);
+        assert_eq!(compaction.removed_message_count, 4);
+        assert!(compaction.summary.contains("summarized"));
+    }
+
+    #[test]
+    fn forks_sessions_with_branch_metadata_and_persists_it() {
+        let path = temp_session_path("fork");
+        let mut session = Session::new();
+        session
+            .push_user_text("before fork")
+            .expect("message should append");
+
+        let forked = session
+            .fork(Some("investigation".to_string()))
+            .with_persistence_path(path.clone());
+        forked
+            .save_to_path(&path)
+            .expect("forked session should save");
+
+        let restored = Session::load_from_path(&path).expect("forked session should load");
+        fs::remove_file(&path).expect("temp file should be removable");
+
+        assert_ne!(restored.session_id, session.session_id);
+        assert_eq!(
+            restored.fork,
+            Some(SessionFork {
+                parent_session_id: session.session_id,
+                branch_name: Some("investigation".to_string()),
+            })
+        );
+        assert_eq!(restored.messages, forked.messages);
+    }
+
+    #[test]
+    fn rotates_and_cleans_up_large_session_logs() {
+        let path = temp_session_path("rotation");
+        fs::write(&path, "x".repeat((super::ROTATE_AFTER_BYTES + 10) as usize))
+            .expect("oversized file should write");
+        rotate_session_file_if_needed(&path).expect("rotation should succeed");
+        assert!(
+            !path.exists(),
+            "original path should be rotated away before rewrite"
+        );
+
+        for _ in 0..5 {
+            let rotated = super::rotated_log_path(&path);
+            fs::write(&rotated, "old").expect("rotated file should write");
+        }
+        cleanup_rotated_logs(&path).expect("cleanup should succeed");
+
+        let rotated_count = rotation_files(&path).len();
+        assert!(rotated_count <= super::MAX_ROTATED_FILES);
+        for rotated in rotation_files(&path) {
+            fs::remove_file(rotated).expect("rotated file should be removable");
+        }
+    }
+
+    fn temp_session_path(label: &str) -> PathBuf {
+        let nanos = SystemTime::now()
+            .duration_since(UNIX_EPOCH)
+            .expect("system time should be after epoch")
+            .as_nanos();
+        std::env::temp_dir().join(format!("runtime-session-{label}-{nanos}.json"))
+    }
+
+    fn rotation_files(path: &PathBuf) -> Vec<PathBuf> {
+        let stem = path
+            .file_stem()
+            .and_then(|value| value.to_str())
+            .expect("temp path should have file stem")
+            .to_string();
+        fs::read_dir(path.parent().expect("temp path should have parent"))
+            .expect("temp dir should read")
+            .filter_map(Result::ok)
+            .map(|entry| entry.path())
+            .filter(|entry_path| {
+                entry_path
+                    .file_name()
+                    .and_then(|value| value.to_str())
+                    .is_some_and(|name| {
+                        name.starts_with(&format!("{stem}.rot-")) && name.ends_with(".jsonl")
+                    })
+            })
+            .collect()
     }
 }

rust/crates/runtime/src/usage.rs

@@ -286,9 +286,8 @@ mod tests {
 
     #[test]
     fn reconstructs_usage_from_session_messages() {
-        let session = Session {
+        let mut session = Session::new();
-            version: 1,
+        session.messages = vec![ConversationMessage {
-            messages: vec![ConversationMessage {
             role: MessageRole::Assistant,
             blocks: vec![ContentBlock::Text {
                 text: "done".to_string(),
@@ -299,8 +298,7 @@ mod tests {
                 cache_creation_input_tokens: 1,
                 cache_read_input_tokens: 0,
             }),
-            }],
+        }];
-        };
 
         let tracker = UsageTracker::from_session(&session);
         assert_eq!(tracker.turns(), 1);

rust/crates/rusty-claude-cli/Cargo.toml

@@ -17,7 +17,6 @@ crossterm = "0.28"
 pulldown-cmark = "0.13"
 rustyline = "15"
 runtime = { path = "../runtime" }
-plugins = { path = "../plugins" }
 serde_json = "1"
 syntect = "5"
 tokio = { version = "1", features = ["rt-multi-thread", "time"] }

rust/crates/rusty-claude-cli/src/init.rs

@@ -8,7 +8,7 @@ const STARTER_CLAUDE_JSON: &str = concat!(
     "  }\n",
     "}\n",
 );
-const GITIGNORE_COMMENT: &str = "# Claw Code local artifacts";
+const GITIGNORE_COMMENT: &str = "# Claude Code local artifacts";
 const GITIGNORE_ENTRIES: [&str; 2] = [".claude/settings.local.json", ".claude/sessions/"];
 
 #[derive(Debug, Clone, Copy, PartialEq, Eq)]
@@ -164,7 +164,7 @@ pub(crate) fn render_init_claude_md(cwd: &Path) -> String {
     let mut lines = vec![
         "# CLAUDE.md".to_string(),
         String::new(),
-        "This file provides guidance to Claw Code (clawcode.dev) when working with code in this repository.".to_string(),
+        "This file provides guidance to Claude Code (claude.ai/code) when working with code in this repository.".to_string(),
         String::new(),
     ];
 

rust/crates/rusty-claude-cli/src/render.rs

@@ -286,7 +286,7 @@ impl TerminalRenderer {
     ) {
         match event {
             Event::Start(Tag::Heading { level, .. }) => {
-                self.start_heading(state, level as u8, output);
+                self.start_heading(state, level as u8, output)
             }
             Event::End(TagEnd::Paragraph) => output.push_str("\n\n"),
             Event::Start(Tag::BlockQuote(..)) => self.start_quote(state, output),
@@ -426,7 +426,6 @@ impl TerminalRenderer {
         }
     }
 
-    #[allow(clippy::unused_self)]
     fn start_heading(&self, state: &mut RenderState, level: u8, output: &mut String) {
         state.heading_level = Some(level);
         if !output.is_empty() {

rust/crates/tools/Cargo.toml

@@ -7,7 +7,6 @@ publish.workspace = true
 
 [dependencies]
 api = { path = "../api" }
-plugins = { path = "../plugins" }
 runtime = { path = "../runtime" }
 reqwest = { version = "0.12", default-features = false, features = ["blocking", "rustls-tls"] }
 serde = { version = "1", features = ["derive"] }

rust/crates/tools/src/lib.rs

@@ -8,13 +8,12 @@ use api::{
     MessageRequest, MessageResponse, OutputContentBlock, StreamEvent as ApiStreamEvent, ToolChoice,
     ToolDefinition, ToolResultContentBlock,
 };
-use plugins::{PluginManager, PluginManagerConfig, PluginTool};
 use reqwest::blocking::Client;
 use runtime::{
     edit_file, execute_bash, glob_search, grep_search, load_system_prompt, read_file, write_file,
-    ApiClient, ApiRequest, AssistantEvent, BashCommandInput, ConfigLoader, ContentBlock,
+    ApiClient, ApiRequest, AssistantEvent, BashCommandInput, ContentBlock, ConversationMessage,
-    ConversationMessage, ConversationRuntime, GrepSearchInput, MessageRole, PermissionMode,
+    ConversationRuntime, GrepSearchInput, MessageRole, PermissionMode, PermissionPolicy,
-    PermissionPolicy, RuntimeConfig, RuntimeError, Session, TokenUsage, ToolError, ToolExecutor,
+    RuntimeError, Session, TokenUsage, ToolError, ToolExecutor,
 };
 use serde::{Deserialize, Serialize};
 use serde_json::{json, Value};
@@ -56,239 +55,6 @@ pub struct ToolSpec {
     pub required_permission: PermissionMode,
 }
 
-#[derive(Debug, Clone, PartialEq)]
-pub struct RegisteredTool {
-    pub definition: ToolDefinition,
-    pub required_permission: PermissionMode,
-    handler: RegisteredToolHandler,
-}
-
-#[allow(clippy::large_enum_variant)]
-#[derive(Debug, Clone, PartialEq)]
-enum RegisteredToolHandler {
-    Builtin,
-    Plugin(PluginTool),
-}
-
-#[derive(Debug, Clone, PartialEq)]
-pub struct GlobalToolRegistry {
-    entries: Vec<RegisteredTool>,
-}
-
-impl GlobalToolRegistry {
-    #[must_use]
-    pub fn builtin() -> Self {
-        Self {
-            entries: mvp_tool_specs()
-                .into_iter()
-                .map(|spec| RegisteredTool {
-                    definition: ToolDefinition {
-                        name: spec.name.to_string(),
-                        description: Some(spec.description.to_string()),
-                        input_schema: spec.input_schema,
-                    },
-                    required_permission: spec.required_permission,
-                    handler: RegisteredToolHandler::Builtin,
-                })
-                .collect(),
-        }
-    }
-
-    pub fn with_plugin_tools(plugin_tools: Vec<PluginTool>) -> Result<Self, String> {
-        let mut registry = Self::builtin();
-        let mut seen = registry
-            .entries
-            .iter()
-            .map(|entry| {
-                (
-                    normalize_registry_tool_name(&entry.definition.name),
-                    entry.definition.name.clone(),
-                )
-            })
-            .collect::<BTreeMap<_, _>>();
-
-        for tool in plugin_tools {
-            let normalized = normalize_registry_tool_name(&tool.definition().name);
-            if let Some(existing) = seen.get(&normalized) {
-                return Err(format!(
-                    "plugin tool `{}` from `{}` conflicts with already-registered tool `{existing}`",
-                    tool.definition().name,
-                    tool.plugin_id()
-                ));
-            }
-            seen.insert(normalized, tool.definition().name.clone());
-            registry.entries.push(RegisteredTool {
-                definition: ToolDefinition {
-                    name: tool.definition().name.clone(),
-                    description: tool.definition().description.clone(),
-                    input_schema: tool.definition().input_schema.clone(),
-                },
-                required_permission: permission_mode_from_plugin_tool(tool.required_permission())?,
-                handler: RegisteredToolHandler::Plugin(tool),
-            });
-        }
-
-        Ok(registry)
-    }
-
-    #[must_use]
-    pub fn entries(&self) -> &[RegisteredTool] {
-        &self.entries
-    }
-
-    fn find_entry(&self, name: &str) -> Option<&RegisteredTool> {
-        let normalized = normalize_registry_tool_name(name);
-        self.entries.iter().find(|entry| {
-            normalize_registry_tool_name(entry.definition.name.as_str()) == normalized
-        })
-    }
-
-    #[must_use]
-    pub fn definitions(&self, allowed_tools: Option<&BTreeSet<String>>) -> Vec<ToolDefinition> {
-        self.entries
-            .iter()
-            .filter(|entry| {
-                allowed_tools.is_none_or(|allowed| allowed.contains(entry.definition.name.as_str()))
-            })
-            .map(|entry| entry.definition.clone())
-            .collect()
-    }
-
-    #[must_use]
-    pub fn permission_specs(
-        &self,
-        allowed_tools: Option<&BTreeSet<String>>,
-    ) -> Vec<(String, PermissionMode)> {
-        self.entries
-            .iter()
-            .filter(|entry| {
-                allowed_tools.is_none_or(|allowed| allowed.contains(entry.definition.name.as_str()))
-            })
-            .map(|entry| (entry.definition.name.clone(), entry.required_permission))
-            .collect()
-    }
-
-    pub fn normalize_allowed_tools(
-        &self,
-        values: &[String],
-    ) -> Result<Option<BTreeSet<String>>, String> {
-        if values.is_empty() {
-            return Ok(None);
-        }
-
-        let canonical_names = self
-            .entries
-            .iter()
-            .map(|entry| entry.definition.name.clone())
-            .collect::<Vec<_>>();
-        let mut name_map = canonical_names
-            .iter()
-            .map(|name| (normalize_registry_tool_name(name), name.clone()))
-            .collect::<BTreeMap<_, _>>();
-
-        for (alias, canonical) in [
-            ("read", "read_file"),
-            ("write", "write_file"),
-            ("edit", "edit_file"),
-            ("glob", "glob_search"),
-            ("grep", "grep_search"),
-        ] {
-            if canonical_names.iter().any(|name| name == canonical) {
-                name_map.insert(alias.to_string(), canonical.to_string());
-            }
-        }
-
-        let mut allowed = BTreeSet::new();
-        for value in values {
-            for token in value
-                .split(|ch: char| ch == ',' || ch.is_whitespace())
-                .filter(|token| !token.is_empty())
-            {
-                let normalized = normalize_registry_tool_name(token);
-                let canonical = name_map.get(&normalized).ok_or_else(|| {
-                    format!(
-                        "unsupported tool in --allowedTools: {token} (expected one of: {})",
-                        canonical_names.join(", ")
-                    )
-                })?;
-                allowed.insert(canonical.clone());
-            }
-        }
-
-        Ok(Some(allowed))
-    }
-
-    pub fn execute(&self, name: &str, input: &Value) -> Result<String, String> {
-        let entry = self
-            .find_entry(name)
-            .ok_or_else(|| format!("unsupported tool: {name}"))?;
-        match &entry.handler {
-            RegisteredToolHandler::Builtin => execute_tool(&entry.definition.name, input),
-            RegisteredToolHandler::Plugin(tool) => {
-                tool.execute(input).map_err(|error| error.to_string())
-            }
-        }
-    }
-}
-
-impl Default for GlobalToolRegistry {
-    fn default() -> Self {
-        Self::builtin()
-    }
-}
-
-fn normalize_registry_tool_name(value: &str) -> String {
-    let trimmed = value.trim();
-    let chars = trimmed.chars().collect::<Vec<_>>();
-    let mut normalized = String::new();
-
-    for (index, ch) in chars.iter().copied().enumerate() {
-        if matches!(ch, '-' | ' ' | '\t' | '\n') {
-            if !normalized.ends_with('_') {
-                normalized.push('_');
-            }
-            continue;
-        }
-
-        if ch == '_' {
-            if !normalized.ends_with('_') {
-                normalized.push('_');
-            }
-            continue;
-        }
-
-        if ch.is_uppercase() {
-            let prev = chars.get(index.wrapping_sub(1)).copied();
-            let next = chars.get(index + 1).copied();
-            let needs_separator = index > 0
-                && !normalized.ends_with('_')
-                && (prev.is_some_and(|prev| prev.is_lowercase() || prev.is_ascii_digit())
-                    || (prev.is_some_and(char::is_uppercase)
-                        && next.is_some_and(char::is_lowercase)));
-            if needs_separator {
-                normalized.push('_');
-            }
-            normalized.extend(ch.to_lowercase());
-            continue;
-        }
-
-        normalized.push(ch.to_ascii_lowercase());
-    }
-
-    normalized.trim_matches('_').to_string()
-}
-
-fn permission_mode_from_plugin_tool(value: &str) -> Result<PermissionMode, String> {
-    match value {
-        "read-only" => Ok(PermissionMode::ReadOnly),
-        "workspace-write" => Ok(PermissionMode::WorkspaceWrite),
-        "danger-full-access" => Ok(PermissionMode::DangerFullAccess),
-        other => Err(format!(
-            "unsupported plugin tool permission `{other}` (expected read-only, workspace-write, or danger-full-access)"
-        )),
-    }
-}
-
 #[must_use]
 #[allow(clippy::too_many_lines)]
 pub fn mvp_tool_specs() -> Vec<ToolSpec> {
@@ -557,7 +323,7 @@ pub fn mvp_tool_specs() -> Vec<ToolSpec> {
         },
         ToolSpec {
             name: "Config",
-            description: "Get or set Claw Code settings.",
+            description: "Get or set Claude Code settings.",
             input_schema: json!({
                 "type": "object",
                 "properties": {
@@ -1700,15 +1466,13 @@ fn build_agent_runtime(
         .clone()
         .unwrap_or_else(|| DEFAULT_AGENT_MODEL.to_string());
     let allowed_tools = job.allowed_tools.clone();
-    let tool_registry = current_tool_registry()?;
+    let api_client = AnthropicRuntimeClient::new(model, allowed_tools.clone())?;
-    let api_client =
+    let tool_executor = SubagentToolExecutor::new(allowed_tools);
-        AnthropicRuntimeClient::new(model, allowed_tools.clone(), tool_registry.clone())?;
-    let tool_executor = SubagentToolExecutor::new(allowed_tools, tool_registry.clone());
     Ok(ConversationRuntime::new(
         Session::new(),
         api_client,
         tool_executor,
-        agent_permission_policy(&tool_registry),
+        agent_permission_policy(),
         job.system_prompt.clone(),
     ))
 }
@@ -1773,7 +1537,7 @@ fn allowed_tools_for_subagent(subagent_type: &str) -> BTreeSet<String> {
             "SendUserMessage",
             "PowerShell",
         ],
-        "claw-code-guide" => vec![
+        "claude-code-guide" => vec![
             "read_file",
             "glob_search",
             "grep_search",
@@ -1817,12 +1581,10 @@ fn allowed_tools_for_subagent(subagent_type: &str) -> BTreeSet<String> {
     tools.into_iter().map(str::to_string).collect()
 }
 
-fn agent_permission_policy(tool_registry: &GlobalToolRegistry) -> PermissionPolicy {
+fn agent_permission_policy() -> PermissionPolicy {
-    tool_registry.permission_specs(None).into_iter().fold(
+    mvp_tool_specs().into_iter().fold(
         PermissionPolicy::new(PermissionMode::DangerFullAccess),
-        |policy, (name, required_permission)| {
+        |policy, spec| policy.with_tool_requirement(spec.name, spec.required_permission),
-            policy.with_tool_requirement(name, required_permission)
-        },
     )
 }
 
@@ -1878,15 +1640,10 @@ struct AnthropicRuntimeClient {
     client: AnthropicClient,
     model: String,
     allowed_tools: BTreeSet<String>,
-    tool_registry: GlobalToolRegistry,
 }
 
 impl AnthropicRuntimeClient {
-    fn new(
+    fn new(model: String, allowed_tools: BTreeSet<String>) -> Result<Self, String> {
-        model: String,
-        allowed_tools: BTreeSet<String>,
-        tool_registry: GlobalToolRegistry,
-    ) -> Result<Self, String> {
         let client = AnthropicClient::from_env()
             .map_err(|error| error.to_string())?
             .with_base_url(read_base_url());
@@ -1895,14 +1652,20 @@ impl AnthropicRuntimeClient {
             client,
             model,
             allowed_tools,
-            tool_registry,
         })
     }
 }
 
 impl ApiClient for AnthropicRuntimeClient {
     fn stream(&mut self, request: ApiRequest) -> Result<Vec<AssistantEvent>, RuntimeError> {
-        let tools = self.tool_registry.definitions(Some(&self.allowed_tools));
+        let tools = tool_specs_for_allowed_tools(Some(&self.allowed_tools))
+            .into_iter()
+            .map(|spec| ToolDefinition {
+                name: spec.name.to_string(),
+                description: Some(spec.description.to_string()),
+                input_schema: spec.input_schema,
+            })
+            .collect::<Vec<_>>();
         let message_request = MessageRequest {
             model: self.model.clone(),
             max_tokens: 32_000,
@@ -1953,8 +1716,6 @@ impl ApiClient for AnthropicRuntimeClient {
                                 input.push_str(&partial_json);
                             }
                         }
-                        ContentBlockDelta::ThinkingDelta { .. }
-                        | ContentBlockDelta::SignatureDelta { .. } => {}
                     },
                     ApiStreamEvent::ContentBlockStop(_) => {
                         if let Some((id, name, input)) = pending_tool.take() {
@@ -2007,82 +1768,32 @@ impl ApiClient for AnthropicRuntimeClient {
 
 struct SubagentToolExecutor {
     allowed_tools: BTreeSet<String>,
-    tool_registry: GlobalToolRegistry,
 }
 
 impl SubagentToolExecutor {
-    fn new(allowed_tools: BTreeSet<String>, tool_registry: GlobalToolRegistry) -> Self {
+    fn new(allowed_tools: BTreeSet<String>) -> Self {
-        Self {
+        Self { allowed_tools }
-            allowed_tools,
-            tool_registry,
-        }
     }
 }
 
 impl ToolExecutor for SubagentToolExecutor {
     fn execute(&mut self, tool_name: &str, input: &str) -> Result<String, ToolError> {
-        let entry = self
+        if !self.allowed_tools.contains(tool_name) {
-            .tool_registry
-            .find_entry(tool_name)
-            .ok_or_else(|| ToolError::new(format!("unsupported tool: {tool_name}")))?;
-        if !self.allowed_tools.contains(entry.definition.name.as_str()) {
             return Err(ToolError::new(format!(
                 "tool `{tool_name}` is not enabled for this sub-agent"
             )));
         }
         let value = serde_json::from_str(input)
             .map_err(|error| ToolError::new(format!("invalid tool input JSON: {error}")))?;
-        self.tool_registry
+        execute_tool(tool_name, &value).map_err(ToolError::new)
-            .execute(tool_name, &value)
-            .map_err(ToolError::new)
     }
 }
 
-fn current_tool_registry() -> Result<GlobalToolRegistry, String> {
+fn tool_specs_for_allowed_tools(allowed_tools: Option<&BTreeSet<String>>) -> Vec<ToolSpec> {
-    let cwd = std::env::current_dir().map_err(|error| error.to_string())?;
+    mvp_tool_specs()
-    let loader = ConfigLoader::default_for(&cwd);
+        .into_iter()
-    let runtime_config = loader.load().map_err(|error| error.to_string())?;
+        .filter(|spec| allowed_tools.is_none_or(|allowed| allowed.contains(spec.name)))
-    let plugin_manager = build_plugin_manager(&cwd, &loader, &runtime_config);
+        .collect()
-    let plugin_tools = plugin_manager
-        .aggregated_tools()
-        .map_err(|error| error.to_string())?;
-    GlobalToolRegistry::with_plugin_tools(plugin_tools)
-}
-
-fn build_plugin_manager(
-    cwd: &Path,
-    loader: &ConfigLoader,
-    runtime_config: &RuntimeConfig,
-) -> PluginManager {
-    let plugin_settings = runtime_config.plugins();
-    let mut plugin_config = PluginManagerConfig::new(loader.config_home().to_path_buf());
-    plugin_config.enabled_plugins = plugin_settings.enabled_plugins().clone();
-    plugin_config.external_dirs = plugin_settings
-        .external_directories()
-        .iter()
-        .map(|path| resolve_plugin_path(cwd, loader.config_home(), path))
-        .collect();
-    plugin_config.install_root = plugin_settings
-        .install_root()
-        .map(|path| resolve_plugin_path(cwd, loader.config_home(), path));
-    plugin_config.registry_path = plugin_settings
-        .registry_path()
-        .map(|path| resolve_plugin_path(cwd, loader.config_home(), path));
-    plugin_config.bundled_root = plugin_settings
-        .bundled_root()
-        .map(|path| resolve_plugin_path(cwd, loader.config_home(), path));
-    PluginManager::new(plugin_config)
-}
-
-fn resolve_plugin_path(cwd: &Path, config_home: &Path, value: &str) -> PathBuf {
-    let path = PathBuf::from(value);
-    if path.is_absolute() {
-        path
-    } else if value.starts_with('.') {
-        cwd.join(path)
-    } else {
-        config_home.join(path)
-    }
 }
 
 fn convert_messages(messages: &[ConversationMessage]) -> Vec<InputMessage> {
@@ -2149,7 +1860,6 @@ fn push_output_block(
             };
             *pending_tool = Some((id, name, initial_input));
         }
-        OutputContentBlock::Thinking { .. } | OutputContentBlock::RedactedThinking { .. } => {}
     }
 }
 
@@ -2377,7 +2087,7 @@ fn normalize_subagent_type(subagent_type: Option<&str>) -> String {
         "verification" | "verificationagent" | "verify" | "verifier" => {
             String::from("Verification")
         }
-        "claudecodeguide" | "claudecodeguideagent" | "guide" => String::from("claw-code-guide"),
+        "claudecodeguide" | "claudecodeguideagent" | "guide" => String::from("claude-code-guide"),
         "statusline" | "statuslinesetup" => String::from("statusline-setup"),
         _ => trimmed.to_string(),
     }
@@ -3195,13 +2905,9 @@ mod tests {
     use super::{
         agent_permission_policy, allowed_tools_for_subagent, execute_agent_with_spawn,
         execute_tool, final_assistant_text, mvp_tool_specs, persist_agent_terminal_state,
-        response_to_events, AgentInput, AgentJob, GlobalToolRegistry, SubagentToolExecutor,
+        AgentInput, AgentJob, SubagentToolExecutor,
-    };
-    use api::{MessageResponse, OutputContentBlock, Usage};
-    use plugins::{PluginTool, PluginToolDefinition, PluginToolPermission};
-    use runtime::{
-        ApiRequest, AssistantEvent, ConversationRuntime, RuntimeError, Session, ToolExecutor,
     };
+    use runtime::{ApiRequest, AssistantEvent, ConversationRuntime, RuntimeError, Session};
     use serde_json::json;
 
     fn env_lock() -> &'static Mutex<()> {
@@ -3217,17 +2923,6 @@ mod tests {
         std::env::temp_dir().join(format!("clawd-tools-{unique}-{name}"))
     }
 
-    fn make_executable(path: &PathBuf) {
-        #[cfg(unix)]
-        {
-            use std::os::unix::fs::PermissionsExt;
-
-            let mut permissions = std::fs::metadata(path).expect("metadata").permissions();
-            permissions.set_mode(0o755);
-            std::fs::set_permissions(path, permissions).expect("chmod");
-        }
-    }
-
     #[test]
     fn exposes_mvp_tools() {
         let names = mvp_tool_specs()
@@ -3257,170 +2952,6 @@ mod tests {
         assert!(error.contains("unsupported tool"));
     }
 
-    #[test]
-    fn global_registry_registers_and_executes_plugin_tools() {
-        let script = temp_path("plugin-tool.sh");
-        std::fs::write(
-            &script,
-            "#!/bin/sh\nINPUT=$(cat)\nprintf '{\"plugin\":\"%s\",\"tool\":\"%s\",\"input\":%s}\\n' \"$CLAWD_PLUGIN_ID\" \"$CLAWD_TOOL_NAME\" \"$INPUT\"\n",
-        )
-        .expect("write script");
-        make_executable(&script);
-
-        let registry = GlobalToolRegistry::with_plugin_tools(vec![PluginTool::new(
-            "demo@external",
-            "demo",
-            PluginToolDefinition {
-                name: "plugin_echo".to_string(),
-                description: Some("Echo plugin input".to_string()),
-                input_schema: json!({
-                    "type": "object",
-                    "properties": { "message": { "type": "string" } },
-                    "required": ["message"],
-                    "additionalProperties": false
-                }),
-            },
-            "sh".to_string(),
-            vec![script.display().to_string()],
-            PluginToolPermission::WorkspaceWrite,
-            script.parent().map(PathBuf::from),
-        )])
-        .expect("registry should build");
-
-        let names = registry
-            .definitions(None)
-            .into_iter()
-            .map(|definition| definition.name)
-            .collect::<Vec<_>>();
-        assert!(names.contains(&"bash".to_string()));
-        assert!(names.contains(&"plugin_echo".to_string()));
-
-        let output = registry
-            .execute("plugin_echo", &json!({ "message": "hello" }))
-            .expect("plugin tool should execute");
-        let payload: serde_json::Value = serde_json::from_str(&output).expect("valid json");
-        assert_eq!(payload["plugin"], "demo@external");
-        assert_eq!(payload["tool"], "plugin_echo");
-        assert_eq!(payload["input"]["message"], "hello");
-
-        let _ = std::fs::remove_file(script);
-    }
-
-    #[test]
-    fn global_registry_normalizes_plugin_tool_names_for_allowlists_and_execution() {
-        let script = temp_path("plugin-tool-normalized.sh");
-        std::fs::write(
-            &script,
-            "#!/bin/sh\nINPUT=$(cat)\nprintf '{\"tool\":\"%s\",\"input\":%s}\\n' \"$CLAWD_TOOL_NAME\" \"$INPUT\"\n",
-        )
-        .expect("write script");
-        make_executable(&script);
-
-        let registry = GlobalToolRegistry::with_plugin_tools(vec![PluginTool::new(
-            "demo@external",
-            "demo",
-            PluginToolDefinition {
-                name: "plugin_echo".to_string(),
-                description: Some("Echo plugin input".to_string()),
-                input_schema: json!({
-                    "type": "object",
-                    "properties": { "message": { "type": "string" } },
-                    "required": ["message"],
-                    "additionalProperties": false
-                }),
-            },
-            script.display().to_string(),
-            Vec::new(),
-            PluginToolPermission::WorkspaceWrite,
-            script.parent().map(PathBuf::from),
-        )])
-        .expect("registry should build");
-
-        let allowed = registry
-            .normalize_allowed_tools(&[String::from("PLUGIN-ECHO")])
-            .expect("plugin tool allowlist should normalize")
-            .expect("allowlist should be present");
-        assert!(allowed.contains("plugin_echo"));
-
-        let output = registry
-            .execute("plugin-echo", &json!({ "message": "hello" }))
-            .expect("normalized plugin tool name should execute");
-        let payload: serde_json::Value = serde_json::from_str(&output).expect("valid json");
-        assert_eq!(payload["tool"], "plugin_echo");
-        assert_eq!(payload["input"]["message"], "hello");
-
-        let builtin_output = GlobalToolRegistry::builtin()
-            .execute("structured-output", &json!({ "ok": true }))
-            .expect("normalized builtin tool name should execute");
-        let builtin_payload: serde_json::Value =
-            serde_json::from_str(&builtin_output).expect("valid json");
-        assert_eq!(builtin_payload["structured_output"]["ok"], true);
-
-        let _ = std::fs::remove_file(script);
-    }
-
-    #[test]
-    fn subagent_executor_executes_allowed_plugin_tools() {
-        let script = temp_path("subagent-plugin-tool.sh");
-        std::fs::write(
-            &script,
-            "#!/bin/sh\nINPUT=$(cat)\nprintf '{\"tool\":\"%s\",\"input\":%s}\\n' \"$CLAWD_TOOL_NAME\" \"$INPUT\"\n",
-        )
-        .expect("write script");
-        make_executable(&script);
-
-        let registry = GlobalToolRegistry::with_plugin_tools(vec![PluginTool::new(
-            "demo@external",
-            "demo",
-            PluginToolDefinition {
-                name: "plugin_echo".to_string(),
-                description: Some("Echo plugin input".to_string()),
-                input_schema: json!({
-                    "type": "object",
-                    "properties": { "message": { "type": "string" } },
-                    "required": ["message"],
-                    "additionalProperties": false
-                }),
-            },
-            script.display().to_string(),
-            Vec::new(),
-            PluginToolPermission::WorkspaceWrite,
-            script.parent().map(PathBuf::from),
-        )])
-        .expect("registry should build");
-
-        let mut executor =
-            SubagentToolExecutor::new(BTreeSet::from([String::from("plugin_echo")]), registry);
-        let output = executor
-            .execute("plugin-echo", r#"{"message":"hello"}"#)
-            .expect("plugin tool should execute for subagent");
-        let payload: serde_json::Value = serde_json::from_str(&output).expect("valid json");
-        assert_eq!(payload["tool"], "plugin_echo");
-        assert_eq!(payload["input"]["message"], "hello");
-
-        let _ = std::fs::remove_file(script);
-    }
-
-    #[test]
-    fn global_registry_rejects_conflicting_plugin_tool_names() {
-        let error = GlobalToolRegistry::with_plugin_tools(vec![PluginTool::new(
-            "demo@external",
-            "demo",
-            PluginToolDefinition {
-                name: "read-file".to_string(),
-                description: Some("Conflicts with builtin".to_string()),
-                input_schema: json!({ "type": "object" }),
-            },
-            "echo".to_string(),
-            Vec::new(),
-            PluginToolPermission::ReadOnly,
-            None,
-        )])
-        .expect_err("conflicting plugin tool should fail");
-
-        assert!(error.contains("conflicts with already-registered tool `read_file`"));
-    }
-
     #[test]
     fn web_fetch_returns_prompt_aware_summary() {
         let server = TestServer::spawn(Arc::new(|request_line: &str| {
@@ -4000,11 +3531,8 @@ mod tests {
                 calls: 0,
                 input_path: path.display().to_string(),
             },
-            SubagentToolExecutor::new(
+            SubagentToolExecutor::new(BTreeSet::from([String::from("read_file")])),
-                BTreeSet::from([String::from("read_file")]),
+            agent_permission_policy(),
-                GlobalToolRegistry::builtin(),
-            ),
-            agent_permission_policy(&GlobalToolRegistry::builtin()),
             vec![String::from("system prompt")],
         );
 
@@ -4030,42 +3558,6 @@ mod tests {
         let _ = std::fs::remove_file(path);
     }
 
-    #[test]
-    fn response_to_events_ignores_thinking_blocks() {
-        let events = response_to_events(MessageResponse {
-            id: "msg-1".to_string(),
-            kind: "message".to_string(),
-            model: "claude-opus-4-6".to_string(),
-            role: "assistant".to_string(),
-            content: vec![
-                OutputContentBlock::Thinking {
-                    thinking: "step 1".to_string(),
-                    signature: Some("sig_123".to_string()),
-                },
-                OutputContentBlock::Text {
-                    text: "Final answer".to_string(),
-                },
-            ],
-            stop_reason: Some("end_turn".to_string()),
-            stop_sequence: None,
-            usage: Usage {
-                input_tokens: 1,
-                output_tokens: 1,
-                cache_creation_input_tokens: 0,
-                cache_read_input_tokens: 0,
-            },
-            request_id: None,
-        });
-
-        assert!(matches!(
-            &events[0],
-            AssistantEvent::TextDelta(text) if text == "Final answer"
-        ));
-        assert!(!events
-            .iter()
-            .any(|event| matches!(event, AssistantEvent::ToolUse { .. })));
-    }
-
     #[test]
     fn agent_rejects_blank_required_fields() {
         let missing_description = execute_tool(